similar to: Possible cause of the error: unknown c standard 'gnu99'

Hi All, I am trying to make R package using R 2.6.2 And I am getting following error. When I give R CMD check t1\ ---------- Making package t1 ------------ adding build stamp to DESCRIPTION making DLL ... making CGHseg_rewrite.d from CGHseg_rewrite.c making rowMedians.d from rowMedians.c making runavg.d from runavg.c gcc-sjlj -std=gnu99 -Ic:/R/R-2.6.2/include -O3 -Wall -c

Hi All, I am calling some c code from R. It successfully makes the dll and .so files. When I run .so in Linux is works prefect but hangs in windows. Though the dll loads but it never returns back from the c function Can you please suggest the possible cause of this thank you vidhu [[alternative HTML version deleted]]

Hi All, My R code takes very long time to finish the processing. I want to see at what stage the script is running. So I wrote some output messages using cat. But instead of displaying the cat messages at different stages they are buffered and displayed in the end when entire processing is done. Can you please suggest how to stop this buffering or some alternative way to display messages Thank

Hi All, I have a huge tab separated file which a many columns. I want to read only few specific columns in R object. There are no column names/headers in the file. Can someone please suggest how can I do that. I checked the help of read.delim but wasnt able to find such option Thank you Reagards Vidhu [[alternative HTML version deleted]]

Hello, I have installed R 2.6 on windows 2000 and now from the command prompt when I type R it show " 'R' is not recognized as an internal or external command, operable program or batch file." If I change the path to C:\R\R-2.6.2\bin and then type R it runs fine. I have changed my envionment variable Path to C:\R\R-2.6.2\bin; Still its not working. Can you please give some

Hi All, I am trying to make write a table in RSQLite. And I get the error mentioned below mat<-as.data.frame(matrix(rnorm(n=244000000),nrow=244000,ncol=1000)) > dbWriteTable(con, "array", mat) [1] FALSE *Warning message: In value[[3]](cond) : RS-DBI driver: (error in statement: too many SQL variables)* Can someone please tell me what is maximum size of a table( max number of

Hi All, I have a .c file and I need to make a dll so that it could be called by R. I have successfully made .so from .c file and its working great. But i have no clue of making dll. I tried googling for help ...but not much of use Please suggest something regards Vidhu [[alternative HTML version deleted]]

Hi, * I am using read.table command as follow kegg<-read.table("c:/IDs.tab",header =TRUE,quote= "'", sep="\t") * Fragment of file is as follow: ID Pathway 04916 Melanogenesis 04920 Adipocytokine signaling pathway 04930 Type II diabetes mellitus 04940 Type I diabetes mellitus 04950 Maturity onset diabetes of the young 05010

Hello. When trying to compile R-3.0.2 on Windows 7 64bit, I get an error relating to "alone_decoder.c: Permission denied." The entire error code is copied below. gcc -std=gnu99 -m64 -shared -o Riconv.dll Riconv.def win_iconv.o touch stamp gcc -std=gnu99 -m64 -I../../include -I. -Iapi -DLZMA_API_STATIC -DHAVE_CONFIG_H -DWIN32 -O3 -Wall -pedantic -march=core-avx-i -O3 --param

https://bugzilla.samba.org/show_bug.cgi?id=8471 Summary: The file of DBCS file name contains DBCS second byte of x'5C' cause error. Product: rsync Version: 3.0.8 Platform: All OS/Version: All Status: NEW Severity: normal Priority: P5 Component: core AssignedTo: wayned at

Hello, I'm trying to calculate a certain distance estimator for my thesis. I have a program in C that works fine when I call it with .C() in R, but since I'm dealing with big matrices like 30000x20000 it was getting a stack overflow. Now I have the same program but more efficeintly coded using malloc, and it works perfectlry in C, compiles well with R CMD SHLIB but when I call it with

Jarrod, On 19 August 2016 at 04:43, Jarrod Hadfield wrote: | Hi All, | | Users have contacted me because they can not build MCMCglmm from source. All are using R 3.3.0 on various machines with different compilers | | gcc (Ubuntu 5.4.0-6ubuntu1~16.04.2) 5.4.0 | g++ (Ubuntu 4.8.4-2ubuntu1~14.04.3) 4.8.4 | Mac OS X El Capitan (version/compiler unspecified) | | The issue seems to be with mixing

Hi I am getting error : Error in plot.new() : figure margins too large Can you please help -----code is ------------------------------------------------------------ temp <- seq(5500000/2, 22000000, 5500000/2) sV2 <- c(1, 1+temp[-length(temp)]) eV2 <- temp i=1 bitmap(paste("c:/vidhu/poster/poster_56half_2", LETTERS[i], ".png", sep = ""), "png256",

Hi again, I had tried to follow David's suggestion to take a step back and look into codegen instead of hacking on RuntimeDyld but then I quickly realized that I don't understand what exactly needs to be done to fully register Objective-C runtime. I decided to iterate on JIT code again and somehow I found that I can hook into SectionMemory by subclassing it and working with its

Hi, I'm struggling to install RCurl for 32-bit linux and am hoping for some suggestions. I obtained RCurl_1.3-1.tar.gz from CRAN today, and am using a very recent version of R: R version 2.10.1 Patched (2010-01-12 r50970). I'm not the sysadmin for this system (disclaimer: my sysadmin skills are not very good, I'm afraid). curl is available centrally on the system but

Hi, With a fresh Rdevel r66690 (yesterday 26th) in ~/R/Rtrunk I get : ~/R/Rtrunk $ ./configure CC="gcc -std=gnu99 -fsanitize=address" CFLAGS="-fno-omit-frame-pointer -O0 -g -Wall -pedantic -mtune=native" --without-recommended-packages ~/R/Rtrunk $ make clean ~/R/Rtrunk $ make Works fine. Now adding --enable-strict-barrier to the end : ~/R/Rtrunk $ ./configure

This looks like the result of including a C++ system header inside an extern "C" block. There is no evidence of this happening in the current version 2.22.1. However, it did happen in the previous version 2.22 via the chain of inclusions: MCMCglmmcc.h -> cs.h -> R.h -> various C++ system headers See Writing R Extensions P 108. I would check that the people reporting this bug

Hi, I am trying to compile a 64-build of the latest dovecot v2.2.19 on my SuSE Linux Enterprise Server 10 (x64) system. I've run ./configure with two parameters, the --prefix one and the --with-ssldir one. During the make stage, I am getting the following 'internal compiler error' message : --------------------------------------------- [...] gcc -DHAVE_CONFIG_H -I. -I../..

I am trying to build xen-3.3.0 and I keep running into this error. I have checked and everything is there and installed and the PATH is correct. I found someone on the 15th who also had the same problem but never got a reply back so I am asking again. Here is the error: make[2]: Entering directory `/usr/src/xen-3.3.0/extras/mini-os'' [ -e include/xen ] || ln -sf

Hi I'm seeing quite high cpu sys utilisation and an increased system load the past few days on my servers. It appears it doesn't start at exactly the same time for the different servers, but I've not (yet) been able to pin the cpu usage to a specific task or entries in the logs. The cluster is running distribute with 8nodes and 4 bricks each version 3.10 The nodes have 32 (HT) cores