similar to: R CMD check <PACKAGE> Error

Hi, Is there such a thing? If no: is it easily simulated? thanks, Joh

Why is class(spectrum[["Ion"]]) after this "factor"? spectrum <- cbind(spectrum,Ion=rep("", nrow(spectrum)),Deviation.AMU=rep(0.0, nrow(spectrum))) slowly going crazy ... Joh

Hi, Is there any way to trick R CMD check into not throwing this error after I created a dedicated "plot" incarnation for my custom function? * checking S3 generic/method consistency ... WARNING plot: function(x, ...) plot.MQUSpecMatch: function(x, mozlabel, labelcex) Thanks again, Joh

>From: Johannes Graumann <johannes_graumann at web.de> >Date: 2007/12/18 Tue PM 04:40:37 CST >To: r-help at stat.math.ethz.ch >Subject: [R] All anchored series from a vector? lapply(1:length(myvector) function(.length) { c(myvector[1}:myvector[.length]) }) but test it because i didn't. >Hi all, > >What may be a smart, efficient way to get the following result:

Hi, Any ideas on how to efficiently convert > list(c(1,2,3),c(4,5,6)) to > data.frame(OriginalListIndex=c(1,1,1,2,2,2),Item=c(1,2,3,4,5,6)) Thanks for any hints, Joh

Hello, Banging my head against a wall here ... can anyone light the way to a pattern modification that would make the following TRUE? identical( grep( "^Intensity\\s[^HL]", c("Intensity","Intensity L", "Intensity H", "Intensity Rep1")), as.integer(c(1,4))) Thank you for your time. Sincerely, Joh

Dear all, Can anyone please shed some light onto how to do this? This will give me all "intensity" columsn in my data frame: intensityindeces <- grep("^Intensity",names(dataframe),value=TRUE) This will give me the maximum intensity for the first row: intensityone <- max(dataframe[1,intensityindeces]) What I'm now looking for is how to dfo this for the whole data

Hi, Is there any way to get an expression into a data.frame, such that "grid.table" from "gridExtra" will plot it evaluated in the table body? The docu does it for the header, but is the body possible? Thanks, Joh

Hello, With the help of "seek" I can start "readBin" from any byte offset within my file that I deem appropriate. What I would like to do is to be able to define the endpoint of that read as well. Is there any solution to that already out there? Thanks for any hints, Joh

Hello, I came across this by using R cmd check - otherwise I would probably not have noticed. One of my functions does something like this: # postscript() # plot(1, xlim = c(0, 10), ylim = c(0, 4), type = "n", ann = FALSE, axes = FALSE) # text(1:10, 2, c("a","b"), cex = seqcex, family="mono",font=2) Which results in the error: Error in text.default(1:10, 2,

Hi, Does anyboody have insight into what this error terminating "R CMD check" on an in-house package may imply? > ### > cat("Time elapsed: ", proc.time() - get("ptime", pos = 'CheckExEnv'),"\n") Error in get("ptime", pos = "CheckExEnv") : unused argument(s) (pos = "CheckExEnv") Calls: cat -> cat.default

Hello R-ologists, Imagine you have a list "list" like so: >list [[1]] [1] "IPI00776145.1" "IPI00776187.1" [[2]] [1] "Something" "IPI00807764.1" "IPI00807887.1" [[3]] [1] "IPI00807764.1" [[4]] [1] "Somethingelse" What I need to achieve is a filtered list "list2" like so: >list2 [[1]] [1]

Hello, As prompted by B. Ripley (see below), I am transfering this over from R-User ... For a package I am writing a function that looks like test <- function(Argument1=NA){ # Prerequisite testing if(!(is.na(Argument1))){ if(!(is.character(Argument1))){ stop("Wrong class.") } } # Function Body cat("Hello World\n") } Documentation of this is straight forward:

Hi, I fail to find "choose.dir()" in my current R install (see below)? Didn't that exist at some point? How to achieve "file.choose()" equivalent functionality for directories? Thanks for any hints, Joh > sessionInfo() R version 2.11.1 (2010-05-31) x86_64-pc-linux-gnu locale: [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C [3]

Hello, I'm writing a package am running 'R CMD check' on it. Is there any way to make 'R CMD check' not warn about a missmatch between 'NA_character_' (in the function definition) and 'NA' (in the documentation)? Thanks for any help. Sincerely, Joh

Hello again, I'm trying to do the following: subset(dataframe,list %in% strsplit(dataframe[[Field]],",")) But This returns always the complete dataframe, since the strsplit(dataframe[[Field]],",") is evaluated as one big list for the whole data frame rather than one list per row. How can I have this evaluated on a per row basis? After 1.5 h hitting head against wall -

Hello, Is it possible to get all "par" content calculated for "plot" without actually plotting anything? I'm missing an option "plot=FALSE" ... "type="n"" will still open a device and draw the axes ... Thanks, Joh

Hi, What is an efficient way to take this DF data.frame(A=c(1,2,NA,NA),B=c(1,NA,NA,4)) and get c(NA,"TWO","BOTH","ONE") as the result, where NA corresponds to a row without "NA"s, TWO indicates NA in the second and ONE in the first column. Thanks for any pointers. Joh

Hello, I'm new to this and am trying to teach myself some R by plotting biological data. The growth curve in question is supposed to be fitted to the Verhulst equation, which may be transcribed as follows: f(x)=a/(1+((a-0.008)/0.008)*exp(-(b*x))) - for a known population density (0.008) at t(0). I am trying to rework the example from "An Introduction to R" (p. 72) for my case and

Hello, I have a list of character vectors like this: sequences <- list( c("M","G","L","W","I","S","F","G","T","P","P","S","Y","T","Y","L","L","I","M",