similar to: row by row similarity

Hello All, Once again thanks for all of the help to date. I am climbing my R learning curve. I've got a few more questions that I hope I can get some guidance on though. I am not sure whether the etiquette is to break up multiple questions or not but I'll keep them together here for now as it may help put the questions in context despite the fact that the post may get a little long.

Hello R-users, I've got a file with individuals as colums and the clusters where they occur in as rows. And I wanted a similarity matrix which tells me how many times each individual occurs with another. My eventual goal is to make Venn-diagrams from the occurence of my individuals. So I've this: cluster ind1 ind2 ind3 etc. 1 0 1 2 2 3 0 1 3

Dear R-users, i have a simple problem maybe, but i don't see the solution. i want to find the entry-wise closest element of an vector compared with another. ind1<-c(1,4,10) ind2<-c(3,5,11) for (i in length(ind2):1) { print(which.min(abs(ind1-ind2[i]))) } for ind2[3] it should be ind1[3] 10, for ind2[2] it should be ind1[2] 4 and for ind2[1] it should be ind1[1] 1. but with the

Hi Everyone, I would like to do sequential subtractions within a group so that I know the time between separate observations for a group of individuals. My data: data <- structure(list(group = c("IND1", "IND1", "IND2", "IND2", "IND2", "IND3", "IND4", "IND5", "IND6", "IND6"), date_obs =

x0=rnorm(100) y0=rpois(100,3)+1 ind=as.data.frame(table(y0)) ind1=ind[,1] ind2=ind[,2] phi=NULL for (i in 1:length(ind2)){ phi[i]=sum(x0[y0==ind1[i]])/ind2[i] } [[alternative HTML version deleted]]

Dear R users, I would like to accumulate objects generated from 'for' loop to a list or array. To illustrate the problem, arbitrary data set and script is shown below, x <- data.frame(a = c(rep("n",3),rep("y",2),rep("n",3),rep("y",2)), b = c(rep("y",2),rep("n",4),rep("y",3),"n"), c =

Hello R-users, I've got a file with individuals as colums and the clusters where they occur in as rows. And I wanted a table which tells me how many times each individual occurs with another. I don't really know how such a table is called...it is not a frequency table....My eventual goal is to make Venn-diagrams from the occurence of my individuals. So I've this: cluster ind1 ind2

Hi Everyone, I have the following problem: data <- structure(list(prochi = c("IND1", "IND1", "IND1", "IND2", "IND2", "IND2", "IND2", "IND3", "IND4", "IND5"), date_admission = structure(c(6468, 6470, 7063, 9981, 9983, 14186, 14372, 5129, 9767, 11168), class = "Date")), .Names =

-----BEGIN PGP SIGNED MESSAGE----- Hash: SHA1 I have two matrices: > m1 <- matrix(1,4,4) > m1 [,1] [,2] [,3] [,4] [1,] 1 1 1 1 [2,] 1 1 1 1 [3,] 1 1 1 1 [4,] 1 1 1 1 > m2 <- matrix(0,3,3) > diag(m2) <- 1 > m2 [,1] [,2] [,3] [1,] 1 0 0 [2,] 0 1 0 [3,] 0 0 1 I want to get indicies from m2

Hi! I need to run ols regressions with Huber-White sandwich estimators and the correponding standard errors, without an intercept. What I'm trying to do is create an ols object and then use the robcov() function, on the order of: f <- ols(depvar ~ ind1 + ind2, x=TRUE) robcov(f) However, when I go f <- ols(depvar ~ ind1 + ind2 -1, x=TRUE) I get the following error: Error in

Hello R-users, I've got a huge table with about 20.00 rows and 50 columns. The table now has headers as Members1, Members2 etc. My data are 8 different individuals. And I've got a column with clusters. So each individual belongs to different clusters and can occurs multiple times within a cluster (that's the reason that there can be more than 8 members). I want a presence/ absence

Hi, I'm doing robust regression with the following command rlm(dip~ind1+ind2-1,method="M",psi=psi,maxit=1000,acc=1e-15) now when I ask for a summary summary(rlm(dip~ind1+ind2-1,method="M",psi=psi,maxit=1000,acc=1e-15)) I get Coefficients: Value Std. Error t value ind1 -0.0377 0.0000 -24203.1415 ind2 1.0370 0.0000 668735.7195 taht is

Hello, I am a R beginner and hoping to obtain some hints or suggestions about using permutations to sort a data set I have. Here is an example dataset: Ind1 11 00 12 15 28 Ind2 21 33 22 67 52 Ind3 22 45 21 22 56 Ind4 11 25 74 77 42 Ind5 41 32 67 45 22 This will be read into a variable using read.table. What I want to do is permute these individuals and every

Hey everyone, I am developing a package and I am wondering if there is a good practice for naming classes, builders, attributes getters and setters when dealing with object composition. I know that it is usually a good practice to give to the builder the same name as the class and, if possible, to avoid to use upper case letters. My problem is that, when I build an object containing an other

Hi R users, I really need help with subsetting data frames: I have a large database of medical records and I want to be able to match patterns from a list of search terms . I've used this simplified data frame in a previous example: db <- structure(list(ind = c("ind1", "ind2", "ind3", "ind4"), test1 = c(1, 2, 1.3, 3), test2 = c(56L, 27L, 58L,

Hi all, i purchased a copy of the book Morphometrics with R by Springer. at the end of each chapter there are exercises to train what you just read and (hope) learned... so i have this problem: Define a hypothetical data frame containing five measurments normally distributed(size,head,pectoral,area,weight) for four individuals (named ind1, ind2, etc). ADD A COLUMN corresponding to the

Hi everybody, just a quick question that drives me crazy: Is it possible to "join" 2 logical vectors ? i.e. x<-4 ind <- 1:19200 pin <- c(0, rep(400, 48) * (1:48)) ind1<-((pin[j] + 1) <= ind) & (ind <= pin[j + 2]) ind2<-((pin[j+x] + 1) <= ind) & (ind <= pin[j+x + 2]) ind2 and ind1 give the right TRUE index #but I would like something like that

Hi All, I have a four panel xyplot. I wish to plot each point as an open or filled circle depending on the value of an indicator variable. I assume I need to use panel.superpose(), but I can't figure out the syntax from lattice documentation. Running R 2.1 under Mac OS X 10.4.2. Any suggestions would be appreciated. Nathan Nathan Leon Pace, MD, MStat University of Utah Salt Lake

Hello, I have got two matrices with different length. The matrices have 3 columuns. The first two are coordinates. The third is a measurement. Now I want to get a subtraction between every single value of the third column (between matrix1 and matrix2), but only if the two first coordinates in matrix1 and matrix2 are the same. I tried "FUN=?" in aggregate and ave, but I don't know

Dear all, First I apologize if my question is quite simple, but i'm very newbie with R. I have vectors of the form v = c(1,1,-1,-1,-1,1,1,1,1,-1,1) (longer than this one of course). The elements are only +1 or -1. I would like to calculate : - the frequencies of -1 occurences after 2 consecutives -1 - the frequencies of +1 occurences after 2 consecutives +1 It looks probably something like