similar to: rsprng, snow, rmpi interactions

<<insert bug report here>> I cannot install the R package "rsprng" with the following error message: > install.packages("rsprng") trying URL 'http://www.stathy.com/cran/src/contrib/rsprng_0.3-4.tar.gz' Content type 'application/x-tar' length 35934 bytes opened URL ================================================== downloaded 35Kb * Installing

When I try to install Rmpi, it has a dependency rsprng which, as its description says: Provides interface to SPRNG 2.0 APIs I installed it on Mepis by installing the appropriate debs with minimal drama. In the rpm world of Fedora, no such luxury. Installing rsprng fails because: checking sprng.h usability... no checking sprng.h presence... no checking for sprng.h... no Cannot find sprng 2.0

Rmpi is not currently available on CRAN, and I don't think it has been for a few months. It is available at http://www.stats.uwo.ca/faculty/yu/Rmpi/ Does anyone know its current status? A few months ago I corresponded with the author, who noted some build problems (specifically on Debian) were the hang up, and seemed to be working on it. I wasn't able to get it to work then (on a

Hi, I was trying to install the package Rmpi on a hpc cluster running SGE. The command, and the sessionInfo() is as follows: =========================================== > install.packages("Rmpi",dependencies=TRUE) also installing the dependency ‘rsprng’ trying URL ' http://www.ibiblio.org/pub/languages/R/CRAN/src/contrib/rsprng_1.0.tar.gz' Content type

Dear People, This may not be the right place to ask a question about Rmpi, but I don't know of a better one. I am trying to get a simple program working using Rmpi with the model of 1 R master and n C slaves. What I am trying to do is have each of the C slaves generate a random number from U[0,1], and then have the master collect all n numbers as a vector and output it. However even doing

Hello, I've installed R on my RHEL3 cluster and I am trying to get Rmpi to work properly. R is installed using the following ./configure --prefix=/home/apps/R-2.2.0 I installed snow using R CMD INSTALL /home/apps/snow And finaly Rmpi R CMD INSTALL /home/apps/Rmpi --configure-args=--with-mpi=/path/to/lam There were no errors or warnings upon installation. However when i perform the test

Full_Name: Emmanuel Charpentier Version: 1.6.1 OS: Linux 2.4.20 / Debian Woody Submission from: (NULL) (80.15.78.96) rsprng depends on libraries available in the "genesis" package. However, even when Genesis is installed, the installation of the source package fails for not finding rsprng.h. It turns out that Debian installs it in a subdirectoru of /usr/include, and that the rsprng

Hi all, I'm trying to get the snow package with mpi working on my linux ubuntu 10.04 machine. When I tried to install it (see below) it already had problems with the dependencies. R version 2.14.0 (2011-10-31) Copyright (C) 2011 The R Foundation for Statistical Computing ISBN 3-900051-07-0 Platform: x86_64-pc-linux-gnu (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You

Although this query was inspired by distributed random number generation, one of the questions (#2 below) is a single-machine issue. I call C++ code from R to generate simulated data. I'm doing this on a cluster, and use rmpi and rsprng. While rsprng randomizes R-level random numbers (e.g., from runif), it has no effect on the C code, which is completely SPRNG and MPI ignorant. Currently I

Hello, I plan to use R with my cluster with OpenMPI. I need the packaged 'snow' and 'Rmpi' for that, however, I get an error while downloading and installing them: When I do a: install.packages("Rmpi", dependencies=T) I get this error: checking for mpi.h... no Try to find libmpi.so or libmpich.a checking for main in -lmpi... no libmpi not found.

Dear R yet again! I finally got the Rmpi package to install! Yay!. However, when I go into R to use it, there is an error with the dyn.load file. This should be simple (allegedly). Please help. Thanks, Sincerely, Erin mailto: hodgess at gator.uhd.edu /home/faculty/hodgess/R-2.6.0/bin [hodgess at gator bin]$ ./R CMD INSTALL Rmpi_0.5-4.tar.gz

Dear all, I have used the Rmpi package many times before however this time I've installed it as I always do with openMPI tar.gz file direct from the website. I'm installing on my ubuntu 8.10. Linux 2.6.27-11-generic #1 SMP Thu Jan 29 19:28:32 UTC 2009 x86_64 GNU/Linux All i get is: > library(Rmpi) Segmentation fault :~$ Which dumps me back into the shell, and doens't give me much

?Random.user says (in svn trunk) Optionally, functions \code{user_unif_nseed} and \code{user_unif_seedloc} can be supplied which are called with no arguments and should return pointers to the number of seeds and to an integer array of seeds. Calls to \code{GetRNGstate} and \code{PutRNGstate} will then copy this array to and from \code{.Random.seed}. And it offers as an example void

Hi, The following function use to work, but now it doesn't giving the error "> CallSnow(, 100) Using snow package, asking for 2 nodes 2 slaves are spawned successfully. 0 failed. Error in checkForRemoteErrors(val) : 2 nodes produced errors; first error: no applicable method for 'lapply' applied to an object of class "list" ". Where this is the

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Dear R-users, Does anyone of you have binary files for the packages rpart.permutation, snow and rsprng. I would like to use them in my classification tree. I know they are still at the 0.x development stage, though. Where can I get information on how to compile tar.gz files? I'm using windows XP with R 2.1.0. Thanks, Jan --------------------------------------------------------------------

Hi All, I have k identical parallel pieces of code running, each using n.rand random numbers.? I would like to use the same RNG (for now), and set the seeds so that I can guarantee that there are no overlaps in the random numbers sampled by the k pieces of code.? Another side goal is to have reproducibility of my results.? In?the past I have used C with SPRNG for this task, but I'm hoping

A yum update to lam 7.1.4 (from 7.1.2) broke Rmpi for me this last week and quite a few changes were needed to repair this, so I'm reporting here in case it helps others. This was an x86_64 system - adjust 'lib64' suitably for 32-bit systems. There seems to me to be major organizational changes for a 'patchlevel' update to a setup that previously worked out of the box.

Hello! I am performing coupling of chains in MCMC and I need the same value of seed for two chains. I will show demo of what I want: R code, which might show my example is: niter <- 3 nchain <- 2 tmpSeed <- 123 for (i in 1:niter) { # iterations for (j in 1:nchain) { # chains set.seed(tmpSeed) a <- runif(1) cat("iter:", i, "chain:", j,

Hello everyone, I've been fiddling around with the snow and Rmpi packages on my new Intel Mac, and have run into a few problems. When I make a cluster on my machine, both slaves start up just fine, and everything works as expected. When I try to make a cluster including another networked machine it hangs. I've followed the suggestions at