similar to: plot matrix

Hi, I have been trying to plot density plots using the example on: http://addictedtor.free.fr/graphiques/graphcode.php?graph=139 I used to use this function, but I cannot get any old code or even the example to work. library("geneplotter") require("RColorBrewer") x1 <- matrix(rnorm(1e4), ncol=2) x2 <- matrix(rnorm(1e4, mean=3, sd=1.5), ncol=2) x <-

Hello R help list I have been using the smoothScatter function within the "geneplotter" package to make some graphs using a Sweave Rnw script called via Rscript in a DOS/Windows batch file. The Rscript will ultimately be called by a web service with time-out constraints, hence things need to run as swiftly as possible. The geneplotter package is currently loaded each time R is invoked

Hello, I am attempting to use smoothScatter to plot a heatmap of locations of events in an x-y axis. When I plot the heatmap without passing xlim and ylim parameters, it fills the plot area but the perspective is a bit skewed. I would like to standardize these plots to a uniform window size that does not depend on the range of values in the dataframe. However, when I resize the plot using xlim or

On Tue, 18-Dec-2007 at 11:21AM -0500, James W. MacDonald wrote: |> Duncan Murdoch wrote: |> > Yes, I agree. (As an aside, there's actually a capital S in |> > smoothScatter(), and it's a bit of a pain to install, because |> > geneplotter depends on something that depends on DBI, which is not so |> > easily available these days.) |> |> Somehow I always

Hello, I'm having some trouble getting a good result for a smoothScatter plot. I have some data that I want to log-plot, but when I use smoothScatter the result is not correct. The problem seems to be that with the log="x" argument smoothScatter calculates the bins linearly, so the plot will be skewed towards the right. See for example:

Hi Hadley and everyone, here's a patch for ggplot2 that fixes the behavior of opts(legend.position={left,top,bottom}). If you try the following code in an unmodified ggplot2 options(warn = -1) suppressPackageStartupMessages(library("ggplot2")) data <- data.frame( x = c(1, 2, 3, 4, 5, 6), y = c(2, 3, 4, 3, 4, 5), colour = c(TRUE, TRUE, TRUE, FALSE, FALSE, FALSE))

Hi: Is there a way to get smoothScatter to not clip when I increase the xlim and ylim parameters? Consider the following example: set.seed(17) x1<-rnorm(100) x2<-rnorm(100) smoothScatter(x1,x2) #Now if I increase xlim and ylim notice that the plot seems to be clipped at the former xlim, and ylim boundaries: smoothScatter(x1,x2, xlim=c(-5,5), ylim=c(-5,5)) Thanks. Jen sessionInfo() R

Hi, I want to make a plot similar to sm1 (attached). The code I tried is: dcols <- densCols(x,y) smoothScatter(x,y, col = dcols, pch=20,xlab="A",ylab="B") abline(h=0, col="red") But it turned out to be s1 (attached) with big dots. I was wondering if anything wrong with my code. Thanks,Zhengyu -------------- next part -------------- A non-text

Hello, I have a few questions, regarding the smoothScatter function. I have a scatter plot with more than 500,000 data points for two samples. So, I am wanting to display the density in colors to convince people that my good correlation coefficient is not due to an "influential point effect" and plus, I also want to make my scatter plot look pretty. Anyway ... I have been able to

Hello, I have found that in smoothScatter it is not possible to reverse the axes plotted (R version 2.9.0) .   It appears that this arises from the hard coding of xlim and ylim in smoothscatter.R in the lines : x <- x[ xlim[1] <= x[,1] & x[,1] <=xlim[2], ]   (line  number 25) and x <- x[ ylim[1] <= x[,2] & x[,2] <= ylim[2], ]  (line number 31) This results in a x

Hello All R-Gurus: ISSUE: Cannot view R vignettes due in Ubuntu Linux (a debian variant). note: this issue has been posted to this list before with no responses given see https://stat.ethz.ch/pipermail/r-help/2007-September/141178.html DETAILS: I am trying to view an R vignette. Here is the situation: I issue the openvignette(), then select the vignette I wish to view...and the system returns:

I'm working with a large dataset - large enough that when I do a scatter plot the points all blur together, so I want to plot their density by color - a heat map or something like that. I've used smoothScatter for tasks like this, but the problem is that my current dataset really only looks good on a log-log scale. When I do the following command smoothScatter( data,

Hi! How to find out which plot function is used when i call plot(hist.default(1:10,plot=F)) and all works fine ? The reason why I would like to know it is that after loading some self written R functions > plot(hist.default(1:10,plot=F)) Error in xy.coords(x, y, xlabel, ylabel, log) : x and y lengths differ > traceback() 5: stop("x and y lengths differ") 4: xy.coords(x, y,

I don't usually do much with graphs in R, and this is my first time adding a line of best fit. Hopefully this is an easy problem to solve. I'm looking at a variable called soloKills along the range 5:28. Here are all my commands, in script form: range=5:28 graph=soloKills title="Solo kill/death data" xlabel="Number of deaths/1 game" ylabel="Mean number of kills/1

Good day all, I'm trying to plot a continuous line plot, which is followed by two forecast points eg. one forecast point is 12 months out, and another 24 months out from the last date of the line plot. In my attempts so far, the second plot (the forecast points) is scaled against a new axis scale, thus the two plots are not directly comparable (I need the forecast points to be scaled

dear all, I am writing a sweave documentation for my analysis, and I am plotting huge scatter plot data for microarray. unlucly this take a lot of resource to my pc because of the quality of the image which is to high (I see the PC get stuck for each single spot). how can I overcome this problem? is there a way to make lighter image? john [[alternative HTML version deleted]]

I am currently trying to use R to construct a regression model to explain output based on temperature. I have combined my output and temp data into a notepad file. there is no problem with loading the data into R. > data.df output temp 1 850 17 2 849 17 3 905 17 4 925 17 5 1043 19 6 1104 20 7 1097 18 8 979 19 9 926 18 10 1133 18 ~~ ~~ 240 1124

Dear all, I am running something similar to this short example: library("lattice") library("geneplotter") X=matrix(cbind(1:100,100:1,c(1:50,50:1)),ncol=3) Y=matrix(cbind(1:100,1:100,1:100),ncol=3) names=1:3 dummy.df = data.frame(names = factor(names, levels = names), x = seq_along(names), y = seq_along(names)) xyplot(y ~ x | names, dummy.df, xlim = c(1,100),

I have a need to build a time series and there are a couple of aspects about the time series object that are confusing me. First it seems that ts.union is not doing what I would expect. For example: x0 <- rep(0,10) x1 <- rep(1,10) xt0 <- ts(x0, frequency=10) xt1 <- ts(x1, frequency=10) st2 <- ts.union(xt0, xt1) > xt2 Time Series: Start = c(1, 1) End = c(1, 10) Frequency = 10

Dear users, I'm trying to produce a 3d bar plot but the x and y dimensions have categorical data -- so I only want 3 points on each axis. So I try: require(scatterplot3d) mymat<-data.frame( x=c(1,1,1,2,2,2,3,3,3), y=c(1,2,3,1,2,3,1,2,3), z=c(1,2,3,4,5,6,7,8,9)) scatterplot3d(mymat, type="h", lwd=5, pch=" ", xlab="xlabel",