similar to: Installing one channel GUI

Hello, I have a question on how to get bioconductor running properly on Ubuntu 11.10 as I have tried everything it seems like and I keep on getting this message. But before I go farther can you please email and say that you will help me with this because nobody seems to want to help or know how to. "Cannot find Tcl/Tk package "Tktable". affylmGUI cannot conitnue...." I have

Hello, Is there any way I can use the gregexpr functions (or a different function) in a manner that will also return overlapping (i.e. non disjoint) regular expressions? For instance, when running gregexpr("AAA","AAAAAA"), I get two matches, one at position 1 and one at position 4. I'd like to receive 4 matches at positions 1, 2, 3 and 4. Thanks, Schraga

Hi everyone. I installed affylmGUI and oneChannelGUI package on R 2.7.1 with the latest version of BioC. After I start R, I do get an error that says "Error in loadNamespace(name) : there is no package called 'affylmGUI'" and a pop-up window with a message "fatal error : unable to restore saved data in .Rdata". I would really appreciate your suggestions on how to fix

Hi, I'm developing an R/TclTk application which uses the BWidget and Tktable Tk extensions and I'm trying to make it easy to install. For now, I'm focusing on Windows users who start with nothing. I have built Tcl/Tk and Tktable for windows using Msys/MinGW. (BWidget contains only Tcl scripts so does not need building.) I have then copied Tktable and BWidget into the lib subdirectory

I have been trying to use the package affylmGUI but keep getting the error message that it cannot find the package "Bwidget". I have downloaded the activeTcl for Windows and installed it in the default location C:\Tcl. The problem still persists. I have also tried to copy the files from C:\Tcl\lib into the C:\Arquivos de programas\R\R-2.6.1\Tcl\lib but the problem still there. Any help

Hi, I am trying to run affylmGUI on my mac computer. I have already installed the Tlc package as well as Bwidgets through ActiveTcl conversion installing files. However, when running affylmGUI() on R, I keep getting the message in the attached file. I have copied the tcl folders from the root library to the user library, and have obtained the same issue. I would really appreciate if

Hi, I've been trying to install R on Red Hat Linux 9 for some potential users of my R/TclTk application. I tried using the rpm for R 1.7.1 for Red Hat Linux 9. It told me that I needed: libtcl8.3.so so I looked for a binary release of Tcl 8.3.x on http://www.tcl.tk/software/tcltk/8.3.html but found that the link to the Tcl 8.3.x binaries pointed to ActiveTcl 8.4.x . I couldn't see

Hello, I have a problem with using Iwidgets in R while i'm able to use BWiget and Tktable. If I let tcl list the names of packages, Iwidgets seems available. I use R 2.6.0; in addition addTclPath("C:/Tcl/lib") has been used (in which iwidets is present) > try(tcl("package", "names")) <Tcl> http opt tcltest ::Utility::expand Widget ::Utility::number

Hello, I've meanwhile got onechannelGUI running (my OS is windows). I'm trying to use it for the analysis of human exon arrays. I was able to load cel files and run them through affymetrix power tools, to obtain normalized affy data. My next step was trying to find differentially spliced exons. The menu offers to calculate either Midas or splice index scores. However, when I try to use

Hello... Curious to know whether the TK extensions “Tktable” and “Iwidgets” will be included in future versions of R (full installation). These are key components of GUI construction and would be very useful in my current R-tcltk endeavors. I realize that I could just install a version of ActiveTcl, which includes the extensions; however, my goal is to eventually distribute my work keeping

I am the maintainer of a Bioconductor package (affylmGUI) which uses tcltk. It freezes inconsistently on MS Windows, but not Mac or Unix. see details below. After considerable testing I have reduced the problem from a few thousand lines of code to 30 lines! If you paste the following lines of code into an R window: testGUI <- function(){ require(tcltk) MainWindow <-

Dear R-devel list members, The Tktable package for Tcl/Tk is apparently missing from the Windows distribution of R 4.0.0. I (actually a user of the Rcmdr package) discovered this when trying to use the new-data-set dialog in the Rcmdr package, producing the error, "Tcl package 'Tktable' must be installed first." I believe the Tktable has been part of the R distribution for

Hello, I am exploring the TCLTK package under R and try to load and use additional TCL libraries (under Windows, with TCL8.3). For example : > addTclPath("C:/TCL/lib/bwidget1.5") > tclRequire("BWidget") <Tcl> 1.5 Loading seems to work, but when I try to create a specific widget : # The main window appears correctly > top=tktoplevel() # Trying to insert a

I maintain the package affylmGUI. It works when installed on many previous versions of R. I have today tested exactly the same code under R-2.15.3, R-3.0.2, R-3.1.0, R-3.1.1, R-3.1.2 and R-devel. I have also tested the versions of affylmGUI downloaded by biocLite for each version of R and the same result applies. I have no errors under 2.15.3, 3.0.2, 3.1.0 and 3.1.1. The following error

Hello, I have a dataframe with 40 columns and around 450,000 rows. The first column in each row is a factor id and the remaining are numeric. Some rows have the same ids. What I want to do is to merge each set of rows sharing the same ids (id set) into one single row (summarizing row) with that id. To create the summarizing row, I'd like to apply a different function on each of the

Dear R-devel: Would R core team consider endorsing a graphical toolkit and trying to facilitate development of little GUI tools? I need a gui matrix editor for users that want to be able to write matrices that are later used to simulate data. Instead of teaching them to write a covariance matrix (for example, for mvtnorm), I want to tell them run a function that pops up a table they can fill

Hello, Following a discussion initiated on r-devel, that mentions SciViews-R and other GUIs issues for R, I would like to make comments (and would be happy if these comments would initiate interesting initiatives). A big, big problem with SciViews-R is that a part of it is written in Visual Basic 6, a M$$$$ language, not supported any more, buggy, non transposable to other platforms, etc,

Hi I've a problem with the following example: library(tcltk) .Tcl("array unset tclArray") myRarray <- matrix(1:1000, ncol=20) for (i in (0:49)) for (j in (0:19)) .Tcl(paste("set tclArray(",i,",",j,") ",myRarray[i+1,j+1],sep="")) tt<-tktoplevel() table1 <- tkwidget(tt,"table",variable="tclArray",

I would like to use a tclArray: mytkarray <- tclArray() as the variable for a table: table1 <- tkwidget(f1, 'table', variable= mytkarray) but if I include character strings with embedded spaces, I get braces appearing in the table. I can remove them using a non-R tclarray, (the difference between the first example of http://www.sciviews.org/_rgui/tcltk/Tktable.html and

Hi everybody, I am trying to write a simple progress display based on a tcltk toplevel. My first approach was to use the progressBar widget from the BWidget library but since this is not available on every system (missing on at least almost all windows systems, I guess...) I wanted to have a backup there. So my second strategy was to use a simple toplevel with a label and update the tclvariable