similar to: Building R on Sun Solaris 10 (SPARC) using Sun Studio 12

Hi, I'm working on a server with a sparcv9 chip using SunOS 5.9 Generic May 2002. The compilers are the Sun Studio 12 compilers. I'm trying to build a 64-bit version of R-2.6.1, and while the configure script runs, the make does not. Here are the options I set in config.site: ________________________________________________________________________ _ R_PAPERSIZE=letter CC="cc

Full_Name: Jim Brown Version: 2.6.0 / 2.6.1 OS: Solaris 10 (SPARC) Submission from: (NULL) (35.8.15.102) I have been able to successfully compile version 2.5.1 using the Sun Studio 12 compilers on Sun Solaris 10 (SPARC). All tests using "make check" pass with a status of OK. However, the following section of "reg-tests-1.R" fails when I attempt to test after a build of

I have an R program I am attempting to use to generate some SVGs. I've been using the cairoDevice library. When running a session not connected to an X session (like if I'm sshed in), attempting "library(cairoDevice)" causes: *** caught segfault *** address 0x8, cause 'memory not mapped' Traceback: 1: .C("R_gtk_setEventHandler", PACKAGE =

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In session of R, occour following bug's in de (data.entry) function. *** caught segfault *** address 0x2c, cause 'memory not mapped' Traceback: 1: dataentry(odata, as.list(Modes)) 2: de(..., Modes = Modes, Names = Names) 3: data.entry(posto, fecha, serie = registros, status) 4: onEditaSerie(serie, "serie") 5: function () serie <- onEditaSerie(serie,

I was experimenting with Rexcelpoi from Armstrong Whit. I was able to compile the package in my Redhat linux machine with a few warnings but no errors. I was not able to get the package built on my windows xp computer, but that is for another post. I load R on the linux computer and type in the library call to Rexcelpoi the receive the following error. library(Rexcelpoi) *** caught

System details: -------------- Sun Blade 1000, Solaris 8, Sun ONE Compiler Suite (rebranded Forte 7), R versions 1.6.0 and 1.6.2 - suspect others are affected, too Problem description: ------------------- Using the recommended env var setting from p.15 of the Admin Guide, the configure script fails the sgemm sunperf test, even though the sunperf libraries are available Not linking with

Hello, I try to install pbdMPI. Compilation successful, but load fails with segfault. Is anyone can help me? R version 3.0.0 pbdMPI version 0.1-6 Intel compiler version 13.1.1 OpenMPI version 1.6.4-1 CPU Intel x86_64 # R CMD INSTALL pbdMPI_0.1-6.tar.gz .. .... checking for gcc... icc -std=gnu99 checking whether the C compiler works... yes checking for C compiler default output file name...

Hello, I'm trying to install KEGGSOAP with bioconductor but i'm facing this problem: /> biocLite("KEGGSOAP") BioC_mirror: http://bioconductor.org Using R version 2.15, BiocInstaller version 1.4.4. Installing package(s) 'KEGGSOAP' trying URL 'http://www.bioconductor.org/packages/2.10/bioc/src/contrib/KEGGSOAP_1.30.0.tar.gz' Content type

Hi, I downloaded 2.8.1 and tried to compile it using gcc 3.4.6. (simple install, just ./configure, make, make check, make install) I found that it compiled and went through the tests fine. The foreign library, however, that seems to be segfaulting on me (see output below). I did see an old posting about a similar problem, but there was no resolution. Have other people experienced this at all?

I have an lapply function call that I want to parallelize. Below is a very simplified version of the code: url_base <- "https://cloud.r-project.org/src/contrib/" files <- c("A3_1.0.0.tar.gz", "ABC.RAP_0.9.0.tar.gz") res <- parallel::mclapply(files, function(s) download.file(paste0(url_base, s), s)) Instead of download a couple of files in parallel, I get a

Hi, I have problems compiling speex 1.2rc1: > /opt/studio/SOS11/SUNWspro/bin/cc -DHAVE_CONFIG_H -I. -I. - > I.. -I../include -I../include -I.. -I/opt/csw/include -I/opt/csw/ > include -xO3 -xarch=v8 -I/opt/csw/include -c skeleton.c > /bin/bash ../libtool --mode=link /opt/studio/SOS11/SUNWspro/bin/cc - > xO3 -xarch=v8 -I/opt/csw/include -xarch=v8 -L/opt/csw/lib -o

Dear R List, I encountered a serious problem regarding the registration of ".C" when following the documentation "Writing R Extensions" that leads to a segmentation fault (tested on windows and mac os x). The registration mechanism for ".C" routines via R_registerRoutines and the R_CMethodDef structure has been enhanced recently with the addition of two fields, one

Hi all, I'm trying to use the package read.table within a foreach loop. I'm grabbing 500M rows of data at a time from two different files and then doing an aggregate/tapply like function in read.table after that. I had planned on doing a foreach loop 39 times at once for the 39 files I have, but obviously that won't work until I figure out why the segfault is occurring. The

Hello, I tried to compile v2.3.1 on Solaris x86 with SUN Pro compilers. I had an error while stats libarary was being compiled and I notice that "-xtarget=generic64" was not passed to f95 while cc used it. Could you tell me how to fix this problem? f95 -PIC -O -I/mounts/devel/SUNWspro/prod/include -c sgram.f -o sgram.o f95 -PIC -O -I/mounts/devel/SUNWspro/prod/include -c

I am trying to compile R-2.4.1 in 64-bit on Solaris 10 running on AMD hardware. I am trying to do this with Sun Studio 11. My config.site looks like this: #! /bin/sh AR="/usr/ccs/bin/ar" TEX="/usr/local/teTeX/bin/i386-pc-solaris2.10/tex" LATEX="/usr/local/teTeX/bin/i386-pc-solaris2.10/latex" PDFTEX="/usr/local/teTeX/bin/i386-pc-solaris2.10/pdftex"

I am trying to compile R-2.4.1 in 64-bit on Solaris 10 running on AMD hardware. I am trying to do this with Sun Studio 11. My config.site looks like this: #! /bin/sh AR="/usr/ccs/bin/ar" TEX="/usr/local/teTeX/bin/i386-pc-solaris2.10/tex" LATEX="/usr/local/teTeX/bin/i386-pc-solaris2.10/latex" PDFTEX="/usr/local/teTeX/bin/i386-pc-solaris2.10/pdftex"

Hello all, (Thank for your reply) I have a web-application in Apache Tomcat, when i start R in this application, I used packe RSJava Code ROmegahatInterpreter interp; String [] rargs = {"--no-save"}; REvaluator e; interp = new ROmegahatInterpreter ( ROmegahatInterpreter.fixArgs(rargs),false ); e =new REvaluator (); Errors ================ R version 2.10.1 (2009-12-14)

I got the following after running succesfully through this loop 28 million times... the loop opens text files in a directory and inserts line by line into a database... *** caught segfault *** address 0xc0000010, cause 'memory not mapped' Traceback: 1: .getGeneric(f, where, package) 2: getGeneric("coerce", where = where) 3: as(obj, "integer") 4:

Dear R community, I am using the R package `interval` in order to perform some modelling tests of the NPMLE convergence in the case of censoring. So all I am doing is drawing a sample from exponential distribution, making it a censored sample and computing the NPMLE of its distribution function. But when run on Linux Calculate 10.4 the program keeps crashing and reporting a segmentation fault