similar to: Help with Error Message

Hola a todos Me gustaría saber si me pueden ayudar con lo siguiente. Realicé un Boxplot usando ggplot2 para visualizar el comportamiento de dos variables. Visualmente no se notan las diferencias porque la gráfica de la derecha (parásitos en el abdomen) llega hasta 20 en el eje y. ¿Cómo puedo hacer para que las dos gráficas muestren la misma escala en el eje Y, es decir, que las dos lleguen a 60?

Hi everyone, Im very new with R and I would like to change the size text (names) in the ylab in a dotplot. I have checked many webpages and R sites,  but I have not found any help. This is the same structure of the plot in R graph Gallery: http://addictedtor.free.fr/graphiques/RGraphGallery.php?graph=150 thanks in thanks is advance José Mi code is this: ### setup the key k <- simpleKey( c(

Hi everyone, I'm trying to reduce the font size in the Y  exe in this plot: http://addictedtor.free.fr/graphiques/RGraphGallery.php?graph=150 Anyone knows how to do it? I have checked the argument lab.cex and cex, but any of these works! if you want to check us this code: ### read the data d <- read.csv( file( "http://addictedtor.free.fr/graphiques/data/150/data.txt" ) )

I made a pie chart and the names of the levels are outside the circle. How do I put the names of the levels within each sector? names(tab13) = paste(c('Regular', 'Bom', 'Excelente'), round(100*prop.table(tab13), dig=1), "%") pie(tab13, col=c("LightYellow", "lightgreen", 'lightblue', 'white'), clockwise=F, radius=.7)

Hi list. I would like to know how do I insert a North arrow, stored as a png file in my computer, in a map? I found lots of post asking similar things, one of them mentioned the pixmap package. The map was done using map() and shapefiles (the code is below). I’m using the pixmap () and addlogo() functions. Well I can import the png with pixmap() function (I guess, once there’s no error message),

Dear R users, Could you help my with the following problem? I want to repeat a glm analysis with 2 independent variables for all 900 variables (snps) in my data set. So, I want to check whether snp1 has a different effect on my outcome variable in patients and controls(phenotype). And repeat that for snp2 to snp900. Is there an easy way to get a summary of the data, e.g. a list of P values of all

Hello all, I'm having difficulty with setting up a mixed model using lme in the nlme package. To summarize my study, I am testing for effects of ornamentation on foraging behavior of wolf spiders. I tested spiders at two different ages (penultimate vs. mature) and of two different phenotypes (one species tested lacks ornamentation throughout life [non-ornamented males] while the other

Dear R-experts, My problem is how to handle a 10GB data file containing genotype data. The file is in a particular format (Illumina final report) and needs to be altered and merged with phenotype data for further analysis. PERL seems to be an frequently used solution for this type of work, however I am inclined to think it should be doable with R. How do I open a text-file, line by line,

Ok, now we have the mapping of color names to color codes (see below) and conversion to rgb (something like Ben Bolker's function), but how to convert rgb to hsv? Thanks to Brian Ripley, Peter Dalgaard and Ben Bolker Details below Regards Jens etc/colors.big maps 455 names to rgb in S syntax etc/rgb.txt maps 657 names to rgb in C syntax, but unlike colors() it has mixed upper and

I have a path: path = "/nfs/users/nfs_n/ns9/ Phenotype Analysis/Results/Run_AmplRatio_neg BinaryAll trained without akapn+tnik.csv" I wish to replace the spaces with "\ " so that it can be read by a system call to unix. Using gsub I try: > gsub(" ","\\ ",path) [1] "/nfs/users/nfs_n/ns9/Phenotype Analysis/Results/Run_AmplRatio_neg BinaryAll

Dear all,   I have data from the following experimental design and trying to fit a mixed model with lme function according to following steps but struggling. Any help is deeply appreciated.   1) Experimental design: I have 40 plants each of which has 4 clones. Each clone planted to one of 4 blocks. Phenotypes were collected from each clone for 3 consecutive years. I have genotypes of plants. I

Dear list, Is there a way to reorder the xaxis using lattice. Using the following data, the x-axis is ordered as BP GH MH PF RE RP SF VT but I would like the x-axis to be ordered as PF RP BP GH VT SF RE MH. Kön Skalor Tillfälle Medelvärde 1 Kvinnor BP 1-inskrivning 36.45283 2 Kvinnor GH 1-inskrivning 38.62255 3 Kvinnor MH 1-inskrivning 62.88889 4

Dear list members, I would like to create two series of plotted mean values and error bars, yet with different locations along the x-axis. Plotting of first series using plotCI with the standard arguments goes without any problem. However I do not succeed to add the second series in the same plot, which should be horizontally shifted from the first series along the x-axis. The “add=TRUE”

Hey, I have code that can check the quality of a data set we're working with (expression data), and I'm having some trouble writing code that would make the expression data we have tie to other data we want to link it to (called phenotype data). Does anyone have any advice on how I could make a single object that would do this? Other relevant info: I want to use the pdata() function,

Hello R Forum users, I was hoping someone could help me with the following problem. Consider the following "toy" dataset: Accession SNP_CRY2 SNP_FLC Phenotype 1 NA A 0.783143079 2 BQ A 0.881714811 3 BQ A 0.886619488 4 AQ B 0.416893034 5 AQ B 0.621392903 6 AS B 0.031719125 7 AS NA 0.652375037 "Accession"

Hi all, I have a question with regard to making plots using function "scatterplot3d". Please see the example below. It looks like, for y axis, the tickmark text was cutoff. The number "10" does not show up completely. I tried to work with par(mpg). It does not seem to work. Hope to get some advice here. Thanks much! Hanna C <- runif(30) B <- rep(1:3, each=10) A

Hi, My query is regarding permutation test and reshuffling of genotype/phenotype data I have been using the haplo.stats package of R. for haplotype analysis and I would like to perform an analysis which I'm requesting your advice. I have a data set of individuals genotyped for 12 SNP and a dichotomous phenotype. At first, I have tested each of those SNP independently in order to bypass

Hi, I'm looking for an efficient code that will enable me to reshuffle data (phenotype) for certain number of individuals and creating a loop that will randomly simulate it for 10000 times *(permutation)*. I also need to find how I keep the information (p value for each SNP) gathered for all the 10000 iterations. My data set looks like this (n=500): Individual # Phenotype SNP1 SNP2

Hello, I have data in a dataframe with 139104 rows which is multiple of 96x1449. i have a phenotype file which contains the phenotype information for the 96 samples. the snp name is repeated 1449X96 samples. I haveto merge the two dataframes based on sid and sen. this is how my two dataframes look like dat<-data.frame(snpname=rep(letters[1:12],12),sid=rep(1:12,each=12),

On 01/06/17 13:17, Ismail SEZEN wrote: > >> On 1 Jun 2017, at 03:41, li li <hannah.hlx at gmail.com> wrote: >> >> Hi all, >> I have a question with regard to making plots using function >> "scatterplot3d". >> Please see the example below. It looks like, for y axis, the tickmark text >> was cutoff. >> The number "10"