similar to: loading package in LINUX

Hi All, I want to upload J K Lindsey's "repeated" in a LINUX OS.. I had tried the command.. [root@localhost Desktop] # R CMD INSTALL repeated.gz " WARNING: invalid package 'repeated' " *Installing to library '/usr/local/lib/R/library' ERROR: No packages

Respected Sir, I am working on Hidden Markov Models for count data. My data consist of number of new infectives in a ward per month. I have data for about 50 months. How can I fit a Hidden Markon Model to my data. I am using 'repeated' package('hidden' and 'chidden' arguments). I would like to know how can I estimate the initial values of the parameters(mu and

I have a time series (count) data.. Can you tell me the command for the parametric bootstrapping. My parameters are var to mean ratio and mean run length... -- regina.verghis@gmail.com Regina M.Verghis, [[alternative HTML version deleted]]

Hi, I got command to execute R code from Mark. but it was showing error.. Error in library(hopach) : there is no package called 'hopach' Does it mean this library hopach is not installed. But I have installed complete Bioconductor package. I am confused. can you help me in this thanks Regards, -- Prateek Singh Final year Bioinformatics(BTech) Vellore Institute Of Technology

Dear R-users, I have longitudinal data and would like to fit a model where both the variance-covariance matrix of the random effects and the residual variance are conditional on a (binary) grouping variable. I guess the model would have the following form (in hierarchical notation) Yi|bi,k ~ N(XiB+Zibi, sigmak*Ident) bi|k ~ N(0, Dk) K~Bernoulli(p) I can obtain different sigmas (sigma0 and

Hi, I'm involved in a bioinformatics project at my university, and we're doing a comparison paper between some methods of classification of nc-RNA. I've been encharged of ploting the ROC curves' graphs. But I'm new on working with R and I'm having some difficulty with the prediction-class. I don't get where the values of ROCR.simple$predictions, for example, came from

Hey Team.. We notice that repeated file writes to the Samba server slows down under moderate loading. Has anyone else had this fall off in performance and if so, what did you do to correct it? regards.. Sean Angley, P.Eng. sangley@ca.ibm.com Host Server Support ISM Canada IBM Global Services One Research Drive Regina, CANADA S4S 7H1 PHONE: (306) 790-5199

Hello everyone, I am currently using the mvpart package and would like to change the color scheme it uses, and was hoping someone could help me out. All of the papers I have found have used a grayscale but I can't seem to figure out how they did that! Currently, mvpart plots barplots in a repeating sequence of 3 shades of blue. So if you have 6 response variables the same shade of blue is used

Hi! I have a E1 PRI connected to my TE400P card on span 1, and two channelbanks on span 3 and 4 and * 1.2. Every few hours I get this message and asterisk dies just after that: Warning: No D-channels available! Using Primary on channel 16 anyway! When this happens restarting zaptel and asterisk services, generally puts the system back online my zaptel.con reads: span=1,1,0,ccs,hdb3

https://bugzilla.mindrot.org/show_bug.cgi?id=2019 Bug #: 2019 Summary: After a possible buffer overflow attack sshd does not accept connections any longer. Classification: Unclassified Product: Portable OpenSSH Version: 5.4p1 Platform: ix86 OS/Version: HP-UX Status: NEW Severity: normal

Hi, I have a server running Centos 5.2 and am implementing a GIS mapserver app. I have some sample logs from another implementation that give me an idea of bandwidth requirements but I would like to check the cpu load. I can not be at the server during the test and am interested in knowing if there is logging of cpu load available. Anyone have experience with this? Recommendations? Dave --

Hi, I have 'R' code in file. saved it as exmaple.r here is the code....... library("hopach") GSE <- read.table("gene_expression_data",sep="\t",header=TRUE,row.names=TRUE) gene.dist <- distancematrix(t(GSE),d="euclid") gene.hobj <- hopach(t(GSE), dmat=gene.dist, mss="med") labelstosil(gene.hobj$cluster$label,gene.dist) I dont

Hi there, I am working on clustering genomic data. I am using HOPACH method for clustering. I have a query here. How can i get SS (split silhouette) value for individual clusters. What I am getting as MSS value, is Mean of all SS value of individual cluster. Hence I am getting single value for a gene set. But I would be very helpful for me if I get silhouette value for individual clusters.

Thanks (again) I?aki. There was a typo in my reply above. I should have said: I *can't* answer the question re USE_LOCKING=1. Those other suggestions are really helpful too; I really didn't understand what the difference was (I'm still not clear what the differences are between say openblas-openmp and openblas-openmp64), but I did get R to pass mgcv's thread safe test with both

On Wed, 27 May 2020 at 21:40, Gavin Simpson <ucfagls at gmail.com> wrote: > > Thanks I?aki, that is exactly what i was looking for, esp the last > option which I have now configured as an alias for easy remembering. > > I can answer the question re USE_LOCKING=1. I think that using both > those options is required to get thread-safety even if openblas was > compiled for

Thanks I?aki, that is exactly what i was looking for, esp the last option which I have now configured as an alias for easy remembering. I can answer the question re USE_LOCKING=1. I think that using both those options is required to get thread-safety even if openblas was compiled for single thread use. I don't know to what extent Simon has engaged with upstream on this etc. All I know is

Of course, even a simpler trick is to launch R as follows: LD_PRELOAD=/lib64/atlas/libsatlas.so.3 R and then the symbols in libsatlas take precedence over libopenblas. Or a mix between both alternatives, i.e., setting LD_PRELOAD=/path/to/some/link R and then change that link to point to openblas, atlas... Whatever suits you best. I?aki On Wed, 27 May 2020 at 11:00, I?aki Ucar <iucar at

Dear list, What is the recommended incantation on Fedora 32 to swap out the openblas BLAS that the packaged (rpm) version of R-core installs for ATLAS? I'm running into some problems with some big models I want to fit using the mgcv package, and openblas is apparently not thread safe and is causing problems. I have the following installed: $ dnf list installed | grep ^R R-core.x86_64

Hello, I'm running Samba 3.0.9 on SuSE Enterprise Linux Server 9.0. Samba is acting as a PDC for Win2K/XP systems. I upgraded this system from samba 2.x running on Mandrake 10. I brought over the old smbpasswd file. Domain logons work just fine. Today I changed a users password with smbpasswd and now they can't logon to any domain member workstation. I also created a new

I am using the lattice packge for its levelplot and contourplot. Is it possible to adjust the line thickness of the 'box' and tickmarks in these plots? Thanks for the attention, Matt Sundling