similar to: Incidence estimated from Kaplan-Meier

Dear all, I found something strange when calculating sin of pi value sin(pi) [1] 1.224606e-16 pi [1] 3.141593 sin(3.141593) [1] -3.464102e-07 Any help and comment should be appreciated. Regards Nguyen ____________________________ Nguyen Dinh Nguyen Garvan Institute of Medical Research Sydney, Australia

Dear all, A friend of mine, who just installed Rcmdr package. When calling the package, the error as following comes up. And actually, I've checked in CRAN packages, the tcltk package doesn't exist anymore, but tcltk2. Any help is appreciated Regards Nguyen D Nguyen Garvan Institute of Medical Research Sydney, Australia library(Rcmdr) Loading required package: tcltk Loading Tcl/Tk

Dear Christian, Every single time check update package, ?cwhmisc? always requests updating. I?m aware that the package was latest updated in CRAN on 20Nov2008. Is there anything wrong with my R library or somethingelse? I use R 2.8.1 on Window XP service pack 2 Regards Nguyen Garvan Institute of Medical Research Sydney, Australia

Dear Prof Gray and everyone, As our package developers discussed about incompatibility between Design and survival packages, I faced another problem with cmprsk- a survival dependent packacge. The problem is exactly similar to what happened to the Design package that when I just started running cuminc function, R was suddenly closed. These incidents suggest that maybe many other survival

Dear R helpers, I would like to have abline, for a lm model for example, lying within data range. Do you know how to get it? Thank in advance Nguyen D Nguyen #CODE x<- rnorm(200, 35,5) y<- rnorm(200, 0.87,0.12) plot(y~x, xlim=c(0,50), pch=17, bty="l") abline(lm(y~x)) # I would like abline is between min(x) and max(x) [[alternative HTML version deleted]]

Dear Prof Harrell and everyone, My PC: Window XP service pack 3 and service pack 2 R version 2.8.1 and 2.9 alpha For the last 3 days, after updating R, my two computers have been facing problems when running existing and runable R commands that involves with Design package I attempt to use 'survest', but I failed all the times with R (both 2.8.1 and 2.9 alpha) being shut down

Dear R helpers I have a data set sth like this: set.seed(123);dat <- data.frame(ID= c(rep(1,2),rep(2,3), rep(3,3), rep(4,4), rep(5,5)), var1 =rnorm(17, 35,2), var2=runif(17,0,1)) dat ID var1 var2 1 1 33.87905 0.02461368 2 1 34.53965 0.47779597 3 2 38.11742 0.75845954 4 2 35.14102 0.21640794 5 2 35.25858 0.31818101 6 3 38.43013

Hi, I was wondering if I might be able to ask some advice about doing residual plots for the lmer function in the lme4 package. Our group's aim is to find if the expression staining of a particular gene in a sample (or "core") is related to the pathology of the core. To do this, we used the lmer function to perform a logistic mixed model below. I apologise in advance

Hi. I was wondering if anyone might have some suggestions about how I can overcome a problem of "iteration limit reached without convergence" when fitting a mixed effects model. In this study: Outcome is a measure of heart action Age is continuous (in weeks) Gender is Male or Female (0 or 1) Genotype is Wild type or knockout (0 or 1) Animal is the Animal ID as a factor

Hi, I have a very simply batch file that simply copies a 300M file to a SAMBA volume but the job fails if run via the NT scheduler. Manually running the batch file (ie double clicking in the file manager) works fine as does changing the destination to another "real" NT Share. The problems only occurs on SAMBA volumes and not when using another share from another NT. The batch file

Hello, If the signature of a method defines which generic it implements then I'm confused about why this minimal example I invented won't work : setGeneric("myFun", function(rs, ...){standardGeneric("myFun")}) setGeneric("myFun", function(cs, ...){standardGeneric("myFun")}) setMethod("myFun", "numeric", function(rs, colour =

Hello, I've got a DESCRIPTION file with a the first line: Package: Repitools But, when I run R CMD INSTALL Repitools I get: * installing *source* package Repitools ... ** R ** data ** inst ** preparing package for lazy loading Warning in FUN(X[[1L]], ...) : Created a package name, "2011-04-20 09:05:40", when none found ** help *** installing help indices ** building package

I have a confusing error from R CMD check that I don't get when running the example manually by hand. In the \examples section of an Rd file, I create a GRanges object, then I call a function with the GRanges object, whose first 2 lines are require(GenomicRanges) annoDF <- as.data.frame(anno) # anno is the GRanges object. and that second line gives: Error in

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Is it possible to calculate Kaplan-Meier for left-truncated, right-censored data using survival5? -.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.- r-help mailing list -- Read http://www.ci.tuwien.ac.at/~hornik/R/R-FAQ.html Send "info", "help", or "[un]subscribe" (in the "body", not the subject !) To: r-help-request at

Hello, I have a question about the function lifetab in package KMsurv. The description of the output value surv says "the estimated survival function at the start of the intervals". Are these estimates the ones calculated via Kaplan-Meier probability of survival ? Thanks in advance! -- View this message in context:

Dear all, I have data from 1970 to 1990 for people above age 50. Now I want to calculate survival curves by age starting at age 50 using the Kaplan Meier Estimator. The problem I have is that there are already people in 1970 who are older than 50 years. I guess this is called delayed entry or left truncation (?). I thought the code would be: roland <- survfit(Surv(time=age.enter,

Dear help news reader, I'm trying to draw a Kaplan-Meier curve and would like to ask the news group for some help Supposing I have study comapring two drugs, "A", and "B" and I recorde the time to get to the clinical endpoint (Time), in my case becommming virus free. I have setup the following frame: Time c Drug 1 5 1 A 2 7 1 B 3 2 1 A 4 10 1

Hi Fello: I am asked to compute the Kaplan-Meier estimator of data with right censoring without using surfit(). Does anyone know how to use R to compute the estimators? The data should input X: vector of right-censored observed time for n individuals, and d: vector of failure time indicators (0=censored individual;1=unconsored individual) and the function should return with t: vector of sorted

This is more of a general question without data. After doing 'survdiff', from the 'survival' package, on strata including four groups (so 4 curves on a Kaplan Meier curve) you get a chi squared p-value whether to reject the null hypothesis or not. Is there a method to followup with pairwise testing on the respective groups? I have searched the library but have come up with