similar to: Installing Rmpi on FC5 with lam

Dear R People: I'm having trouble installing Rmpi on a debian machine. Here is my output: bccd at node000:~$ /bccd/home/bccd bccd at node000:~$ bccd at node000:~$ export RMPI_TYPE=OPENMPI bccd at node000:~$ R CMD INSTALL Rmpi_0.5-9.tar.gz * installing to library '/bccd/home/bccd/R/x86_64-pc-linux-gnu-library/2.15' * installing *source* package 'Rmpi' ... checking for gcc...

I am trying to install the R package "Rmpi" which needs libmpi. I've installed openmpi and lam in Centos 5.2: [root at rab45-1 /]# rpm -qv openmpi openmpi-1.2.5-5.el5 openmpi-1.2.5-5.el5 [root at rab45-1 /]# rpm -qv lam lam-7.1.2-14.el5 lam-7.1.2-14.el5 But I get the following error message when trying to install Rmpi: /usr/bin/ld: skipping incompatible /usr/lib/lam/lib/libmpi.so

Hi, I've been trying here to install Rmpi on an SGI IA-64 machine with 64 processors, running SuSE Linux Enterprise Server 9, R 2.4.0 and lam-mpi 7.1.3. While I've read of similar problems on this list, I think I've got an entirely new set of error messages to contribute (see below). I'm not sure what the actual error is and what the @gprel relocation message is about. Any help

I am trying to build Rmpi on Suse 10.2 linux. While I would like to use the RPM version of liblam-7.1.2, I have not been able to do so. It seems that Rmpi makes some pretty strong assumptions when trying to guess the MPI version. Has anyone successfully built Rmpi against lam-7.1.2 recently using R-2.6.0? If so, can you give some pointers about where the libraries and header files need to be

Hello, We have recently added a 64-bit 2 x Dual-Core Athlon server running Red Hat Enterprise Linux AS release 3 to allow for processing of large data sets (>4GB) in R. To integrate this server into our Linux cluster, I have been trying (unsuccessfully) to use Rmpi/lam-mpi to parallel process some of our scripts. While I have successfully compiled R 2.4.0 and lam-mpi 7.1.2 on this server using

I'm just curious if anyone else has had problems with this configuration. I added the CRAN repository to apt and installed 2.5.0 with apt-get. I then did an install.packages("Rmpi") on cluster nodes. Rmpi loads and lamhosts() shows the nodes, but mpi.spawn.Rslaves() fails (something to do with temp files?). Rmpi works fine with the Edgy-native version of R (2.3.x) and installing

Hi R Gurus. I'm trying to install the Rmpi package. Here are the errors: checking for stdint.h... yes checking for unistd.h... yes checking mpi.h usability... no checking mpi.h presence... no checking for mpi.h... no Try to find libmpi or libmpich ... checking for main in -lmpi... no libmpi not found. exiting... ERROR: configuration failed for package 'Rmpi' ** Removing

I'm having trouble with R CMD INSTALL Rmpi_0.5-5.tar.gz --configure-args=~/lam lam is is installed locally. lamboot -d (or lamboot-d and also recon) works. make -k check from the lamtest suite passes all tests. Is this is problem with the -fPIC compiler as in the message? Should it be modified in the Makefile? Any help or comments are appreciated, thanks. * Installing to library

Hello everybody, I am trying to install Rmpi on 64-bit HP-Proliant server. I am facing the following error: * Installing *source* package 'Rmpi' ... Try to find mpi.h ... Found in /usr/local/mpich-1.2.7p1/include Try to find libmpi or libmpich ... Found libmpich in /usr/local/mpich-1.2.7p1/lib Try to find liblam ... checking for main in -llam... no liblam not found. Probably not LAM-MPI

Hello, I've installed R on my RHEL3 cluster and I am trying to get Rmpi to work properly. R is installed using the following ./configure --prefix=/home/apps/R-2.2.0 I installed snow using R CMD INSTALL /home/apps/snow And finaly Rmpi R CMD INSTALL /home/apps/Rmpi --configure-args=--with-mpi=/path/to/lam There were no errors or warnings upon installation. However when i perform the test

Guys, I'm running LAM 7.1.4 and R/Rmpi on a SuSE 9.3 box. When I do >library(Rmpi) The whole thing crashes with the following message: ----------------------------------------------------------------------------- No SSI RPI modules said that they were available to run. This should only happen if you request an MPI thread level that is too high (for example, none of the SSI RPI modules

I am working on a SLES 10 cluster with R available on it. To better use my resources, I want to use Rmpi, but I am having a difficult time installing it. I have set the $R_LIBS variable correctly. The MPI libraries are available through the PGI compiler, but this R instance was compiled with GCC. The Rmpi package can be compiled and installed with %R CMD INSTALL Rmpi_0.5-5.tar.gz

Hello R-help! I am a systems administrator for the University of Southern California. I take care of it's general-purpose research cluster, and have recently been asked to provide access to a parallelized R platform. I do not have any previous experience using R, and have only ever had to do anything more then 'yum -y install R'. We have a myrinet MPI network, and use mpich1 as our

I am running R 2.14.1 on a Windows XP (32 bit) system, and am trying to install the package 'Rmpi' to allow me to parallel process on all cores of a quad-core PC (and if that works well, I want to add extra slaves from a dual-core laptop). Rmpi appears to install OK (see below), but I am encountering the following error when I try and load the package: > utils:::menuInstallLocal()

Many thanks to Dr Yu for updating Rmpi for R 2.6.0, and for starting to make the changes to support Open MPI. I have just built the updated Debian package of Rmpi (i.e. r-cran-rmpi) under R 2.6.0 but I cannot convince myself yet whether it works or not. Simple tests work. E.g. on my Debian testing box, with Rmpi installed directly using Open Mpi 1.2.3-2 (from Debian) and using 'r' from

Hi there, I was wondering why I get the following error message: * checking package dependencies ... ERROR Packages required but not available: Rmpi when I run 'R CMD check' on a package that _suggests_ Rmpi? Why isn't it OK to not have all the suggested packages installed? Maybe one of the 3 following behaviours would be more appropriate: a) Having the error saying

I try to install Rmpi as root with install.packages("Rmpi"). It fails with: ... checking for x86_64-pc-linux-gnu-gcc -std=gnu99 option to accept ISO C89... none needed I am here /usr and it is OpenMPI Trying to find mpi.h ... Found in /usr/include Trying to find libmpi.so or libmpich.a ... Found libmpi in /usr/lib checking for openpty in -lutil... yes checking for main in -lpthread...

Hi Folks, I've recently transitioned to Debian 8.0 and was having a hard time getting Rmpi to work. I believed I'd successfully installed dependencies via > sudo apt-get install r-cran-rmpi > apt-show-versions r-cran-rmpi r-cran-rmpi:amd64/jessie 0.6-5-1 uptodate but when installing the package I was still getting checking mpi.h presence... no checking for mpi.h... no

Dear R People: I'm trying to install Rmpi (latest version) on Ubuntu. However, I'm getting the following error: erin at erin-Y480:~$ R R version 2.15.1 (2012-06-22) -- "Roasted Marshmallows" Copyright (C) 2012 The R Foundation for Statistical Computing ISBN 3-900051-07-0 Platform: x86_64-pc-linux-gnu (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are

Hello everyone im trying to install Rmpi library on centos 6. I have already installed mpich2 1.4 [root@localhost ~]# R --version > R version 2.15.1 (2012-06-22) -- "Roasted Marshmallows" > Copyright (C) 2012 The R Foundation for Statistical Computing > ISBN 3-900051-07-0 > Platform: x86_64-redhat-linux-gnu (64-bit) [root@localhost ~]# mpich2version > MPICH2 Version: