similar to: biocondutor installation problem

Displaying 20 results from an estimated 200 matches similar to: "biocondutor installation problem"

2004 Oct 12
1
R/BioConductor error (PR#7282)
Full_Name: H Deshmukh Version: 2.0 OS: 2000 Submission from: (NULL) (129.174.206.239) Can somebody tell me what is it that i am doing wrong,i was not sure whether to post BioConductor error here or not. Thanks >source("http://www.bioconductor.org/getBioC.R") > getBioC(libName = "all") Running getBioC version 1.2.65.... If you encounter problems, first make sure that
2003 Jul 22
1
using getBioC()
Hello, I am trying to install R/Bioconductor on a G4 Mac running OS X. I have successfully installed R so that a command window opens, but installation of the downloaded Bioconductor package is giving me trouble. After copying/pasting the Bioconductor installation script in to the window and typing getBioC(), I get the following error message. "Error in getBioC(): R not currently
2013 Dec 02
2
creating opus encoder and decoder executable on Windows
Hi all: How do I create opus encoder and decoder executable on Windows using MS Visual Studio 2010? What I'm doing is the following: 1. I downloaded the codebase on my local drive using: $ git clone git://git.opus-codec.org/opus.git 2. Then I go to D:\opus\win32\VS2010 and open the opus.sln using MS Visual Studio 2010. 3. Then I build the solution opus. I get 3 executable at
2006 Sep 03
1
Unexpected source() behavior in R-devel
Why am I seeing the following in R-devel (sept 2, 2006 build) on opensuse 10.1? I'm sure it is something simple I am missing, but I just don't see it (output below). Thanks, Sean > readLines(url("http://www.bioconductor.org/biocLite.R")) [1] "source(\"http://bioconductor.org/getBioC.R\")" [2] ""
2013 Dec 02
0
creating opus encoder and decoder executable on Windows
<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN"> <html><head><title></title> <META http-equiv=Content-Type content="text/html; charset=windows-1251"> <meta http-equiv="Content-Style-Type" content="text/css"> <style type="text/css"><!-- body { margin: 5px 5px 5px 5px;
2003 May 22
0
download problem: configuration
Dear All, I installed R on linux red-hat 7.3. I tried to run getBioC() script, which download R packages from bioconductor site, but I get the followin error message: Error in getBioC() : Your R is not currently configured to allow HTTP connections, which is required for getBioC to work properly. How do I configure R correctly? Thanks, Ron
2005 Jan 27
1
Help with R and Bioconductor
Hi, I am new to using R and Bioconductor. My first attempt at installing R seemed successful. Then while attempting to getBioC() I had to force quit the R application since I had to attend to something else urgently. When i returned and tried to getBioC, I am getting errors indicating that there is a lock on some files. So i would like to uninstall/remove all R components and Bioconductor
2007 Apr 27
1
R-2.5.0 install
I am receiving the following errors when trying to install gcrma and a number of other Bioconductor packages when the installWithVers flag is set to be TRUE. >source("http://www.bioconductor.org/getBioC.R"); >getBioC("gcrma", installWithVers=T); Running biocinstall version 2.0.7 with R version 2.5.0 Your version of R requires version 2.0 of Bioconductor. Loading
2004 Jan 09
1
pb with install
dear all, I try to update my Rversion fro 1.7.1 to 1.8.1 on linux. I have a problem when I try to install pacakges from Bioconductors with : source("http://www.bioconductor.org/getBioC.R") and getBioC(relLevel="release") somme errors append and when I make a library(affy) for example I obtain : > library(affy) Error in setIs("character",
2005 Oct 19
1
Unix proxy and firewall problems
I was trying to install R on a unix server. Because of a firewall i can't install biocLite for working with Bioconductor. With windows it wasn't a problem. I used the option '--internet2' to bypass the firewall. I don't have any idea, how to do it with unix. I tried to set my proxy >Sys.putenv("http_proxy"="http...:8080")
2003 Jul 24
3
R won't connect to the internet on Linux!
OK, I really am struggling with this one! Forgive me if I am being stupid.... I am running R 1.7.1 on Suse Linux 8.1. I connect to the internet through a proxy so I have: IAHC-LINUX03:~ # echo $http_proxy wwwcache.bbsrc.ac.uk:8080 IAHC-LINUX03:~ # echo $HTTP_PROXY wwwcache.bbsrc.ac.uk:8080 just in case ;-) SO, i go into R and I get: >
2006 Feb 01
1
GetBioC install issue
Hi, I am trying to install the BioC package from bioconductor onto a Windows Server 2003 machine. I can connect to bioconductor and when I run the getBioC("affy","release") function it starts to download but then it stops with the following error: Error: unable to create temporary directory 'C:\Program Files\R\R-2.2.1\release\file1eb26e9' The download just ends
2006 Jun 08
0
installation problems Rgraphviz
Problems: -the standard PATH is not fit to compile 64bit stuf, so unset it: unsetenv PATH -we did not have pkg-config installed, used yast to install it -we did not have these environment variables set: setenv LD_LIBRARY_PATH /geninf/prog/VIZ64/lib/graphviz setenv PKG_CONFIG_PATH /geninf/prog/VIZ64/lib/pkgconfig/ we installed graphvix 2.6 and rgraphviz 1.8 we installed in R using:
2003 Jul 02
0
error while runing Bioconductro install script
Dear all! I had installed R 1.6.2. and I tried to download Bioconductor using Bioconductor install script. However, when I run the script in R it reports following: Error in getBioC(all) : Your R is not currently configured to allow HTTP connections, which is required for getBioC to work properly. Can you help me how to solve this problem and successfully download Bioconductor packages. Thank
2002 Jun 18
2
Problems with url/download and http_proxy
I would like to use the getBioC.R script from http://www.bioconductor.org/getBioC.R to install the biobase packages. Unfortunately, url() and download.file() die when trying to talk to my proxy: > getBioC("exprs") connect: Cannot assign requested address unable to connect to 'gproxy1.pfizer.com'. connect: Cannot assign requested address unable to connect to
2002 Jun 18
2
Problems with url/download and http_proxy
I would like to use the getBioC.R script from http://www.bioconductor.org/getBioC.R to install the biobase packages. Unfortunately, url() and download.file() die when trying to talk to my proxy: > getBioC("exprs") connect: Cannot assign requested address unable to connect to 'gproxy1.pfizer.com'. connect: Cannot assign requested address unable to connect to
2012 Feb 06
1
how to access values from functions
Hi All I would like to know how to access the values of the variable lambda.mu and and see what abs(lambdas[1]) does since lambdas is not a keyword. Snippet of the code: scoreFunction <- function(lambdas) { lambda.mu <- abs(lambdas[1]) sme.em(yi,tmei,Xi,Ni,G,lambda.mu,lambda.v)$AICc } Thanks in advance. Regards Ap -- Aparna Sampath Master of Science (Bioinformatics)
2006 Jan 02
1
R crash with complex matrix algebra when using EISPACK=TRUE
Dear subscribers of R-devel I am experiencing that R crashes (further details are given below) in some complex matrix calculations when EISPACK=TRUE has been specified in eigen(). I discovered the behaviour some months ago just after the release of R-2.2.0, and it has been lying on my desk since. I apologise for not having nailed the problem down to a simple function call, but I thought I
2011 Sep 17
8
apt-get --force-yes
Hi , I am trying to install jdk thru puppet . i am getting the force-yes error . err: /Stage[main]/Apiserver::Java/Package[sun-java6-jdk]/ensure: change from purged to present failed: Execution of ''/usr/bin/apt-get - q -y -o DPkg::Options::=--force-confold install sun-java6-jdk'' returned 100: Reading package lists... Please share your idea''s to fix this issue, --
2005 Aug 31
0
Advice about system for installing & updating all R packa ge in a Linux Lab?
If you have several different versions of R installed, you might want to use a script like this one, which should work on (at least) 1.9.1 and newer. <script> #!/bin/sh echo "##############" echo "## This script will attempt to install all available R packages" echo "## from the package repositories:" echo "##" echo "## - CRAN: