Displaying 20 results from an estimated 200 matches similar to: "biocondutor installation problem"
2004 Oct 12
1
R/BioConductor error (PR#7282)
Full_Name: H Deshmukh
Version: 2.0
OS: 2000
Submission from: (NULL) (129.174.206.239)
Can somebody tell me what is it that i am doing wrong,i was not sure whether to
post BioConductor error here or not.
Thanks
>source("http://www.bioconductor.org/getBioC.R")
> getBioC(libName = "all")
Running getBioC version 1.2.65....
If you encounter problems, first make sure that
2003 Jul 22
1
using getBioC()
Hello,
I am trying to install R/Bioconductor on a G4 Mac running OS X. I
have successfully installed R so that a command window opens, but
installation of the downloaded Bioconductor package is giving me
trouble. After copying/pasting the Bioconductor installation script
in to the window and typing getBioC(), I get the following error
message.
"Error in getBioC(): R not currently
2013 Dec 02
2
creating opus encoder and decoder executable on Windows
Hi all:
How do I create opus encoder and decoder executable on Windows using MS Visual Studio 2010?
What I'm doing is the following:
1. I downloaded the codebase on my local drive using: $ git clone git://git.opus-codec.org/opus.git
2. Then I go to D:\opus\win32\VS2010 and open the opus.sln using MS Visual Studio 2010.
3. Then I build the solution opus. I get 3 executable at
2006 Sep 03
1
Unexpected source() behavior in R-devel
Why am I seeing the following in R-devel (sept 2, 2006 build) on opensuse
10.1? I'm sure it is something simple I am missing, but I just don't see it
(output below).
Thanks,
Sean
> readLines(url("http://www.bioconductor.org/biocLite.R"))
[1] "source(\"http://bioconductor.org/getBioC.R\")"
[2] ""
2013 Dec 02
0
creating opus encoder and decoder executable on Windows
<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN">
<html><head><title></title>
<META http-equiv=Content-Type content="text/html; charset=windows-1251">
<meta http-equiv="Content-Style-Type" content="text/css">
<style type="text/css"><!--
body {
margin: 5px 5px 5px 5px;
2003 May 22
0
download problem: configuration
Dear All,
I installed R on linux red-hat 7.3. I tried to run getBioC() script, which download R packages from bioconductor site, but I get the followin error message:
Error in getBioC() : Your R is not currently configured to allow HTTP
connections, which is required for getBioC to work properly.
How do I configure R correctly?
Thanks,
Ron
2005 Jan 27
1
Help with R and Bioconductor
Hi,
I am new to using R and Bioconductor. My first attempt at installing R
seemed successful. Then while attempting to getBioC() I had to force
quit the R application since I had to attend to something else
urgently. When i returned and tried to getBioC, I am getting errors
indicating that there is a lock on some files. So i would like to
uninstall/remove all R components and Bioconductor
2007 Apr 27
1
R-2.5.0 install
I am receiving the following errors when trying to install
gcrma and a number of other Bioconductor packages when
the installWithVers flag is set to be TRUE.
>source("http://www.bioconductor.org/getBioC.R");
>getBioC("gcrma", installWithVers=T);
Running biocinstall version 2.0.7 with R version 2.5.0
Your version of R requires version 2.0 of Bioconductor.
Loading
2004 Jan 09
1
pb with install
dear all,
I try to update my Rversion fro 1.7.1 to 1.8.1 on linux. I have a problem
when I try to install pacakges from Bioconductors with :
source("http://www.bioconductor.org/getBioC.R")
and
getBioC(relLevel="release")
somme errors append and when I make a library(affy) for example I obtain :
> library(affy)
Error in setIs("character",
2005 Oct 19
1
Unix proxy and firewall problems
I was trying to install R on a unix server. Because of a firewall i can't
install biocLite for working with Bioconductor.
With windows it wasn't a problem. I used the option '--internet2' to bypass the
firewall.
I don't have any idea, how to do it with unix.
I tried to set my proxy
>Sys.putenv("http_proxy"="http...:8080")
2003 Jul 24
3
R won't connect to the internet on Linux!
OK, I really am struggling with this one! Forgive me if I am being stupid....
I am running R 1.7.1 on Suse Linux 8.1. I connect to the internet through a proxy so I have:
IAHC-LINUX03:~ # echo $http_proxy
wwwcache.bbsrc.ac.uk:8080
IAHC-LINUX03:~ # echo $HTTP_PROXY
wwwcache.bbsrc.ac.uk:8080
just in case ;-)
SO, i go into R and I get:
>
2006 Feb 01
1
GetBioC install issue
Hi, I am trying to install the BioC package from bioconductor onto a Windows Server 2003 machine. I can connect to bioconductor and when I run the getBioC("affy","release") function it starts to download but then it stops with the following error:
Error: unable to create temporary directory 'C:\Program Files\R\R-2.2.1\release\file1eb26e9'
The download just ends
2006 Jun 08
0
installation problems Rgraphviz
Problems:
-the standard PATH is not fit to compile 64bit stuf, so unset it:
unsetenv PATH
-we did not have pkg-config installed, used yast to install it -we did not
have these environment variables set:
setenv LD_LIBRARY_PATH /geninf/prog/VIZ64/lib/graphviz setenv
PKG_CONFIG_PATH /geninf/prog/VIZ64/lib/pkgconfig/
we installed graphvix 2.6 and rgraphviz 1.8
we installed in R using:
2003 Jul 02
0
error while runing Bioconductro install script
Dear all!
I had installed R 1.6.2. and I tried to download Bioconductor using
Bioconductor install script. However, when I run the script in R it reports
following:
Error in getBioC(all) : Your R is not currently configured to allow HTTP
connections, which is required for getBioC to work properly.
Can you help me how to solve this problem and successfully download
Bioconductor packages.
Thank
2002 Jun 18
2
Problems with url/download and http_proxy
I would like to use the getBioC.R script from
http://www.bioconductor.org/getBioC.R to install the biobase packages.
Unfortunately, url() and download.file() die when trying to talk to my
proxy:
> getBioC("exprs")
connect: Cannot assign requested address
unable to connect to 'gproxy1.pfizer.com'.
connect: Cannot assign requested address
unable to connect to
2002 Jun 18
2
Problems with url/download and http_proxy
I would like to use the getBioC.R script from
http://www.bioconductor.org/getBioC.R to install the biobase packages.
Unfortunately, url() and download.file() die when trying to talk to my
proxy:
> getBioC("exprs")
connect: Cannot assign requested address
unable to connect to 'gproxy1.pfizer.com'.
connect: Cannot assign requested address
unable to connect to
2012 Feb 06
1
how to access values from functions
Hi All
I would like to know how to access the values of the variable
lambda.mu and and see what abs(lambdas[1])
does since lambdas is not a keyword.
Snippet of the code:
scoreFunction <- function(lambdas)
{
lambda.mu <- abs(lambdas[1])
sme.em(yi,tmei,Xi,Ni,G,lambda.mu,lambda.v)$AICc
}
Thanks in advance.
Regards
Ap
--
Aparna Sampath
Master of Science (Bioinformatics)
2006 Jan 02
1
R crash with complex matrix algebra when using EISPACK=TRUE
Dear subscribers of R-devel
I am experiencing that R crashes (further details are given below) in
some complex matrix calculations when EISPACK=TRUE has been specified in
eigen().
I discovered the behaviour some months ago just after the
release of R-2.2.0, and it has been lying on my desk since.
I apologise for not having nailed the problem down to a simple function
call, but I thought I
2011 Sep 17
8
apt-get --force-yes
Hi ,
I am trying to install jdk thru puppet . i am getting the force-yes
error .
err: /Stage[main]/Apiserver::Java/Package[sun-java6-jdk]/ensure:
change from purged to present failed: Execution of ''/usr/bin/apt-get -
q -y -o DPkg::Options::=--force-confold install sun-java6-jdk''
returned 100: Reading package lists...
Please share your idea''s to fix this issue,
--
2005 Aug 31
0
Advice about system for installing & updating all R packa ge in a Linux Lab?
If you have several different versions of R installed, you might want to use
a script like this one, which should work on (at least) 1.9.1 and newer.
<script>
#!/bin/sh
echo "##############"
echo "## This script will attempt to install all available R packages"
echo "## from the package repositories:"
echo "##"
echo "## - CRAN: