similar to: errors when setting up R2.4.0-win32.exe

Hi, I am using SAM (from siggenes_1.2.11 package) method to select genes from a microarray data set. After installing the latest R2.4.0 on my computer, to my surprise the results are totally different from that calculated using R2.1.1. Even the example code doesn't work the same way under these two versions of R. Does anybody know what is going on? Thanks for any suggestions.

A number of users have spotted a terminal problem with the 'debug' package under R2.4.0, along the lines of > mtrace(x) > x() Error in attr(value, "row.names") <- rlabs : row names must be 'character' or 'integer', not 'double' This arose from a bug in 'rbind.data.frame' in R2.4.0 itself. The bug is fixed in R2.4.0 patched, so the

Dear Ruser, I use abline() function to add the reference line successfully, but i can't display the values corresponding to the reference line on the x/y axis, anybody knows how to display it? *My simulated programs:* y<-rnorm(50) plot(x,y) abline(v=0.5) *#my question is how to display x=0.5 in the x axis?* Thanks in advance. -- With Kind Regards, oooO::::::::: (..):::::::::

Dear Rusers, I have some data in .csv file like "2004-8-1" and "2004-10-1", and i need to convert them into days from the origin (January 1, 1960). I have tried the function date.mmddyyyy(), but cannot get it. Anybody can show me how to handle the date data? Thanks very much! My dataset like: time 2004-8-1 2004-10-1 2001-9-1 2002-9-1 -- With Kind Regards,

Dear friends, The following is an example to explain my question. I want to get a legend which will show the z-values according to different colors in image() function. x<-sort(runif(10)) #x-coordinates y<-sort(runif(10)) #y-coordinates z<-matrix(runif(100),nrow=10) #attributes values image(x,y,z,col=gray((6:3)/6)) # legend(x,y,legend=z,col=gray((6:3)/6)) #error. the colors should

Dear friends, After fitting a generalized linear models ,i hope to get the variance of alpha,variance of beta and their covariance, that is , the variance-covariance matrix/information of alpha and beta , suppose *B* is the object of GLMs, i use attributes(B) to look for the options ,but can't find it, anybody knows how to get it? > attributes(B) $names [1] "coefficients"

Dear friends, My dataset is like the following: x y mcpvalue 0.4603578 0.6247629 1.001 0.4603715 0.6247788 1.001 0.4603852 0.6247948 1.001 0.4110561 0.5664841 0.995 The x and y variables are unsorted. I use the function image(x,y,mcpvalue) to generate a plot, but the error is that "increasing 'x' and

Dear all, Following the help from gam(mgcv) help page, i tried to analyze my dataset with all the default arguments. Unfortunately, it can't be run successfully. I list the errors below. #m.gam<-gam(mark~s(x,y)+s(lstday2004)+s(slope)+s(ndvi2004)+s(elevation)+s(disbinary),family=binomial(logit),data=point)

Dear friends, In S-PLUS, we can use the following argument, but not in R. mode12 <- gam(score1 ~ lo(latitude) + lo(longitude)) I searched the help in S-PLUS, it says lo() Allows the user to specify a Loess fit in a GAM formula, but i didn't find the correponding function in R. Anybody knows how to do the similar task in R? Thanks very much. -- With Kind Regards, oooO:::::::::

Dear R users, I hope to explain the concepts of skewness and kurtosis by generating series of distributions with same skewness and different kurtosis or with same kurtosis and different skewness, but it seems that i cannot find the right functions. I have searched the mailing list, but no answers were found. Is it possible to do that in R? Which function could be used? Thanks a lot. --

Dear R users, We have some programs for the specific task in our research, but they were very commonly used. We want to make some functions for them, anybody can recommend any good tools to facilitate us to create R functions even without going deep into the theories of R functions ? Any suggestions or help are greatly appreciated. -- With Kind Regards, oooO::::::::: (..):::::::::

Dear all, I have two variables, y and x. It seems that the relationship between them is Piecewise Linear Functions. The cutpoint is 20. That is, when x<20, there is a linear relationship between y and x; while x>=20, there is another different linear relationship between them. How can i specify their relationships in R correctly? # glm(y~I(x<20)+I(x>=20),family = binomial, data =

Hi I am a linux administrator. I have got some problem with using samba as NT domain controller. The follow is my problem: I have configured sama as NT domain controller by following configuration steps in samba documentation package. Then I join windowxp profestional to the samba domain, I sucessfully joined, but after windowxp is restarted, a message is displayed When i try to logon to samba

Dear friends, As we all know, the usual model selection criteria(e.g.deviance,AIC...) in GLMs isn't very good for selecting the best model when overdispersion exist, so we need to adjust the corresponding statistic,see(Fitzmaurice,G.M. (1997) Model selection with overdispersed

Dear friends, When i read the R-help , i often find the following case: e.g.:surf.gls(np, covmod, x, y, z, nx = 1000, ...) #Package Spatial: Arguments: covmod: function to evaluate covariance or correlation function * ...: parameters for 'covmod'* How should i find the further information on "*...: parameters for 'covmod'*" ? I use the ?covmod, but

Dear Rusers, I want to know which function in R can perform the following tasks: 1.surface-data grid(x,y,z) #which could be done in splus, the name was from splus's options of graph 2. contourplot(x,y,z) #which could be done in splus By the way, where can i find some useful materials to learn to plot 3-dimensionel graphs? Thanks! -- With Kind Regards, oooO::::::::: (..):::::::::

Dear friends, I need the get the 2.5% and 97.5% quantile from each row of a matrix, how should i get it? BTW, i can get the min/max value from each row of a matrix, using the following programs, is there an easy function to do it? simmin<-matrix(NA,nrow=47,ncol=1) for (i in 1:47) { simmin[i,]<-min(datas[i,]) } Thanks for your help. -- With Kind Regards, oooO:::::::::

Dear Rusers, When i start R, there always the following work to do first, how should i cancel it? *--- Please select a CRAN mirror for use in this session ---* I don't know why it does so, maybe i have done something unintentionally. Thanks. -- With Kind Regards, oooO::::::::: (..)::::::::: :\.(:::Oooo:: ::\_)::(..):: :::::::)./::: ::::::(_/:::: :::::::::::::

Dear Rusers, I'd like to take the cases of cancer of the larynx in chorley(spatstat) to explain my question. I want to join the points of cancer of the larynx with the disused industrial incinerator to generate lines, and then calculate the angles of these line comparing the horizontal line? How can i get it? It seems to be difficult to get the angles Thanks a lot. -- With Kind

Dear R friends, When fitting GLMs in R, we may need to specify the variance function to do our analysis. I had thought it's the mean value, but it seems not. Could anybody expain the correct meaning of *mu* in the variance function of GLMs? The following content is from the R-hlep. variance for all families other than quasi, the variance function is determined by the family. The quasi