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Dear R-users, I'm using lattice package and function xyplot for the first time so you will excuse me for my inexperience. I'm facing quite a simple problem but I'm having troubles on how to solve it, I've read tons of old mails in the archives and looked at some slides from?Deepayan Sarkar but still can not get the point. This is the context. I've got data on 9 microRNAs, each

Hi everyone, I am trying to find a way to filter a table; If I am given for example the following table: > head(intra) chr miRNA start end strand ACC hsa_ID region region_start region_end gene_id transcrip_id 1 chr1 miRNA 1102484 1102578 + ACC="MI0000342"; ID="hsa-mir-200b"; exon 1102484 1102578 NR_029639 NR_029639 2 chr1

Hi there, I wonder if there is a way of efficiently generating a correlation matrix of two expression matrices. I want to correlate miRNA and mRNA expression and used the following code: ##dat.mi miRNA expression matrix, dat.m mRNA expression matrix nc <- nrow(dat.mi) cor.mat <- data.frame(rep(NA,nrow(dat.m))) pval.mat <- data.frame(rep(NA,nrow(dat.m))) for(i in 1:nc) { cr <- vector()

On Mon, Sep 14, 2020 at 05:48:07PM +0300, Dan Carpenter wrote: > Hi Jie, > > url: https://github.com/0day-ci/linux/commits/Jie-Deng/i2c-virtio-add-a-virtio-i2c-frontend-driver/20200911-115013 > base: https://git.kernel.org/pub/scm/linux/kernel/git/wsa/linux.git i2c/for-next > config: parisc-randconfig-m031-20200913 (attached as .config) > compiler: hppa-linux-gcc (GCC)

On Mon, Sep 14, 2020 at 05:48:07PM +0300, Dan Carpenter wrote: > Hi Jie, > > url: https://github.com/0day-ci/linux/commits/Jie-Deng/i2c-virtio-add-a-virtio-i2c-frontend-driver/20200911-115013 > base: https://git.kernel.org/pub/scm/linux/kernel/git/wsa/linux.git i2c/for-next > config: parisc-randconfig-m031-20200913 (attached as .config) > compiler: hppa-linux-gcc (GCC)

Hi all! While I am trying to read .cel files with oligo package: afbatch=read.celfiles(list.celfiles()) I get an error: Package 'pd.mirna.1.0.2xgain' was not found in the BioConductor repository How can I overcome this? Thank you in advance

I wonder whether R provides an interface to access miRecords data. Particularly, I am looking for extracting humans miRNA and target genes sequences. All such information is stored in there in a set of structured web site pages (http://mirecords.umn.edu/miRecords) I would greatly appreciate any suggestion even about other data bases from where it is possible to get the same sort of data. I had a

yes,I'm using wxruby2 When I change "samples/text/unicode.rb" 's content: require 'wx' into begin require 'wx' rescue LoadError => no_wx_err begin require 'rubygems' require 'wx' rescue LoadError raise no_wx_err end end and run unicode.rb in this way: ruby -Ku unicode.rb I got the error message like this: unicode.rb:119:

Unluckily I dela with miRNA files whose name may contain the character "*". Because of the special meaning of "*" I have to remove it. I found out how to make list.files() extract only those file names which contain a "*" Namely: # list.files(pattern="\\*") Now I have to process all files whose name does NOT contain the character "*". I cannot

Dear experts, In my application, Chinese characters work great in the body of the page. However, in the title, they appear as boxes instead of something like " ???????? ". I also noticed CNET having the same issue: http://www.cnetnews.com.cn/news/net/story/0,3800050307,39438403,00.htm So my question to experts here is that is it possible to show Chinese

Hi Craig, Thanks for the information. Can you point to the source that specifies tGPR to be R0 - R7? I tried to search in ARMInstrThumb.td but couldn’t find it. Thanks, - Jie On Apr 14, 2019, at 15:28, Craig Topper <craig.topper at gmail.com<mailto:craig.topper at gmail.com>> wrote: I believe there is probably a separate instruction in LLVM for thumb2 add. Probably starting with t2

hi,every i have a php project and use centos to go and how to make folder's privilage and make it saft like: /home/htdocs/test chown -R www:www /home/htdocs/test chmod -R 644 /home/htdocs/test etc thanks very much -------------- next part -------------- An HTML attachment was scrubbed... URL: <http://lists.centos.org/pipermail/centos/attachments/20110228/ddeda51b/attachment.html>

Martin, Just a minor fix. Jie, Try the -r option (or the --recurse) option instead. It looks like the source changed to this: options.c: {"recurse", 'r', POPT_ARG_NONE, &recurse}, But the help is still at: options.c: rprintf(F," -r, --recursive recurse into directories\n"); eric Jie Gao wrote: > > rsync: --recursive:

Sorry for not being specific enough. ARMv7-M includes Thumb and Thumb2. It has 12 regular registers (R0 - R12), and R8 - R12 are used. I can generate mov instruction that from/ R8-R12 to/from R0-R6. From this ARM page http://infocenter.arm.com/help/index.jsp?topic=/com.arm.doc.dui0068b/ch03s03s01.html R9 - R12 have their conventional usage, but I don’t if this is the reason we cannot use them

Hi All, I've got a cron-run rsync (2.4.6) hang on both sides (solaris to solaris). The platform is: SunOS 5.7 Generic_106541-12 sun4u sparc SUNW,Ultra-80 Sorry if this has been asked before, for I couldn't find a searchable archive for this list on . Regards, Jie

Hi all, I'm having some trouble in understanding how to ste the Error() term in the aov() function when fitting a hierarchical ANOVA. I have data concerning the expression of 2 miRNAs in 3 different cell lines, with 2 different extraction methods. The data is organized as follows : Line Extraction Target Expression 1 BC54 miRNA RNU48 22.48 2 BC54 miRNA

Dear All, I am analyzing the miRNA data set in which I have 817 unique probes for each they have 20 features each . I have to group the similar features and take the median across them so that I have a data with no repeats to perform invariant analysis . My data looks something similar format probename sample1 sample2 sample3 A 2.3 2.4 2.5 A

hi R user mtdno<-paste("data",1:3,sep="") tyno<-paste("obs",1:5,sep="") flnm<-paste(mtdno,tyno,"_err.dat",sep="") flnm is [1] "data1obs1_err.dat" "data2obs2_err.dat" "data3obs3_err.dat" [4] "data1obs4_err.dat" "data2obs5_err.dat" but actually what i want is data from 1 to 3

Dear All, Suppose I have a categorical variable a=as.factor(sample(1:3,10,replace=T)) plot(a) and hist(as.numeric(a),freq=F) would give the histogram of it. But I do not know how to add the counts or percentage information for plot.factor(). hist() can do it but as a numeric variable, the x-axis is not 3 categories in this case. Thank you for any suggestion. Best wishes, Jie

Hi, I have a question about heatmap. I have a data with row as microRNA and two columns are two cell expression values for these microRNA. So, like: cell1 cell2 miRNA1 1.5 3.4 miRNA2 1.3 2.4 ................... miRNA50 5 2.1 miRNA51 7.3 0.5 I want to see some miRNA are high in cell1 and low in cell2 but others are low in cell1 and high in cell2. I