similar to: Reading many files at once

Hello List I'm moving this over from the bioC list as, although the problem I'm working on is biological, the current bottle neck is my poor understanding of R. I wonder if someone would help me with the following function. cumulMetric <- function(deMirPresGenes, deMirs){ ??? #need to match position of each miR in deMirPresGenes with its FC to form a vector of FC in correct order ?

Sadly you failed to set your email program to send plain text and the data is corrupted at my end. I also think you need to reduce the size of the data set... the intent here is to increase your understanding, not debug your particular analysis. I will say that I am having a very challenging time understanding what you are trying to accomplish though. What are the equations that you think need

OK, Let's try this again! Here is the reproducible script; it is long because I had to copy the panel dataset here. My question is related to systemfit; I don't know how to get the result for the entire panel. #Reproducible script Empdata<- read.csv("/Users/ngwinuiazenui/Documents/UPLOADemp.csv") View(Empdata) install.packages("systemfit")

I can't get my simultaneous equations to work using system fit. Please help. #Reproducible script Empdata<- read.csv("/Users/ngwinuiazenui/Documents/UPLOADemp.csv") View(Empdata) str(Empdata) Empdata$gnipc<-as.numeric(Empdata$gnipc) install.packages("systemfit") library("systemfit") pdata <- plm.data(Empdata,

Hello list. I have a vector of values: eg > head(diff_mirs_list) [1] "hsa-miR-26b" "hsa-miR-26b" "hsa-miR-23a" "hsa-miR-27b" "hsa-miR-29a" [6] "hsa-miR-29b" and I would like to conditionally replace each value in this vector with a number defined in a dataframe: > fc ???????????? Probe ave.fc 1?????? hsa-let-7a?? 1.28 2?????

Through converting a miRNAs file from FASTA to character format I get a vector which looks like the following: > nml [1] "hsa-let-7a MIMAT0000062 Homo sapiens let-7a" [2] "hsa-let-7b MIMAT0000063 Homo sapiens let-7b" [3] "hsa-let-7c MIMAT0000064 Homo sapiens let-7c" [4] "hsa-let-7d MIMAT0000065 Homo sapiens

Hi, When I look at the summary of an rpart object run on my data, I get 7 nodes but when I plot the rpart object, I get only 3 nodes. Should the number of nodes not match in the results of the 2 functions (summary and plot) or it is not always the same? Look forward to your reply, Carol -------------------------------------------- ?summary(rpart.res) Call: rpart(formula = mydata$class ~ ., data

Hi, There is a question that I am confused. I have a set of data like this: hsa-miR-205--GATA3 0.797882767 1.08E-13 hsa-miR-205--ITGB4 0.750217593 1.85E-11 hsa-miR-187--PGF 0.797604155 3.24E-11 hsa-miR-205--SERPINB5 0.744124886 3.28E-11 hsa-miR-205--PBX1 0.734487224 7.89E-11 hsa-miR-205--MCC 0.72499934 1.80E-10 hsa-miR-205--WNT5B 0.717705259 3.33E-10 hsa-miR-200c--PKN2 0.721746815

Hello everyone, Im working with graphNEL object and want to extract all the nodes which have adjacent nodes with at least 20 nodes in between them. acc(graph, graphnodes) obviously provides a list for the accessable nodes of every node from a node and a number of the edges between them. Like this: $`hsa:8379` hsa:100131844 hsa:10393 hsa:246184 hsa:29882 hsa:29945 1

I have the following vector of strings (shown only the first 3 elements) > desc[1:3] [1] "hsa-let-7a MIMAT0000062 Homo sapiens let-7a" [2] "hsa-let-7a* MIMAT0004481 Homo sapiens let-7a*" [3] "hsa-let-7a-2* MIMAT0010195 Homo sapiens let-7a-2*" > is.vector(desc) [1] TRUE > A <- unlist(strsplit(desc[1:3], " ")) > A [1]

*I have the following function:* /plot_mi_time = function(mdata, miname) { mdata2 = mdata[row.names(hakat) == miname, ] print(mdata2) xcoords <- c(1,1,2,2,3,3,4,4,5,5,6,6) plot(c(xcoords), mdata2, xaxt="n", ylab="Expression", xlab="Time(h)", , main=miname) axis(1, at=xcoords,

I have the following list of strings: name <- c("hsa-miR-555p","hsa-miR-519b-3p","hsa-let-7a") What I want to do is for each of the above strings replace the text after second delimiter with "zzz". Yielding: hsa-miR-zzz hsa-miR-zzz hsa-let-zzz What's the way to do it? [[alternative HTML version deleted]]

Hi guys, one of the questions where you need a real human instead of a search engine, so it would be great if you could help. I have a matrix of z-scores which I would like to filter, sometimes columnwise, sometimes rowwise. Data looks like this: Allstar hsa.let.7a hsa.let.7a.1 hsa.let.7a.2 2 0.87 0.79 -0.57 1.07 3 0.67 -1.14 -0.78 -0.95 4

Mention what is the password of the root user on the disk images created by virt-p2v-make-disk, virt-p2v-make-kickstart, and virt-p2v-make-kiwi, so users know how to login in the live p2v system. --- virt-p2v-make-disk.pod | 2 ++ virt-p2v-make-kickstart.pod | 2 ++ virt-p2v-make-kiwi.pod | 2 ++ 3 files changed, 6 insertions(+) diff --git a/virt-p2v-make-disk.pod

virt-p2v-make-kiwi now forces the launch-virt-p2v mode to 0755 to ensure the executable bit it set for user. --- p2v/virt-p2v-make-kiwi.in | 1 + 1 file changed, 1 insertion(+) diff --git a/p2v/virt-p2v-make-kiwi.in b/p2v/virt-p2v-make-kiwi.in index e493bd4..3506e9b 100644 --- a/p2v/virt-p2v-make-kiwi.in +++ b/p2v/virt-p2v-make-kiwi.in @@ -190,6 +190,7 @@ cp $datadir/issue $output/root/etc/issue

Diff to v1: * Use access rather than stat in gui.c * Remove now uneeded and missplaced include for stat.h Cédric Bosdonnat (4): p2v: use yast2 lan on SUSE distros rather than NM p2v: fix dependencies for SLES / openSUSE p2v: add virt-p2v-make-kiwi to generate kiwi config p2v: add -x option to nm-online .gitignore | 3 + configure.ac | 2 +

Diff to v2: * remove leftover variable declaration in gui.c Cédric Bosdonnat (4): p2v: use yast2 lan on SUSE distros rather than NM p2v: fix dependencies for SLES / openSUSE p2v: add virt-p2v-make-kiwi to generate kiwi config p2v: add -x option to nm-online .gitignore | 3 + configure.ac | 2 + p2v/Makefile.am | 31 +++++-

Hi everyone, I am trying to find a way to filter a table; If I am given for example the following table: > head(intra) chr miRNA start end strand ACC hsa_ID region region_start region_end gene_id transcrip_id 1 chr1 miRNA 1102484 1102578 + ACC="MI0000342"; ID="hsa-mir-200b"; exon 1102484 1102578 NR_029639 NR_029639 2 chr1

Hi there, Here are a few patches to get virt-p2v working on openSUSE and SLES. Note that I intentionnaly use icewm and yast2 lan for SLES and openSUSE since SLES doesn't ship metacity and all of NetworkManager pieces. Cédric Bosdonnat (4): p2v: use yast2 lan on SUSE distros rather than NM p2v: fix dependencies for SLES / openSUSE p2v: add virt-p2v-make-kiwi to generate kiwi config

Hi R user I need to read in some values from a computer program output. I can't change the output format because the developer of the program doesn't allow to change the format of output. There are two formats. First one looks like this if I have 10 variables, ------------------------------------------------------------------------------------------------------ [ 1]