similar to: median of a survfit object

Hello, I would like to learn how to create a pdf and a postscript file from an R graphic. For example, I tried : plot(1) # example pdf("H:/Perso/essai.pdf") postscript("H:/Perso/essai.ps") But the pdf document created is empty. How do these functions work ? Thank you very much. -- David Hajage Interne de santé publique Institut Curie

Hello, I am trying to compute the mdeian of the survival time from the function survfit: > fit <- survfit(Surv(time, status) ~ 1) > fit Call: survfit(formula = Surv(time, status) ~ 1) records n.max n.start events median 0.95LCL 0.95UCL 111 111 111 20 NA NA NA The results is NA? the fit$surv gives values between 1 and 0.749! Am I doing this correct?

Hi List, A friend of mine recently asked the same question as Heinz T?chler. Since I've already written the code I'd like to share with the list. # x is an object returned by "survfit"; # "smed" returns a matrix of 5 columns of # n, events, median, 0.95LCL, 0.95UCL. # The matrix returned has rownames as the # group labels (eg., treatment arms) if any. smed <-

Hi, I'm sure this should be simple but I can't figure it out! I want to get the median survival calculated by the survfit function and use the value rather than just be able to print it. Something like this: library(survival) data(lung) lung.byPS = survfit(Surv (time, status) ~ ph.ecog, data=lung) # lung.byPS Call: survfit(formula = Surv(time, status) ~ ph.ecog, data = lung) 1

I've a data set with 60000 rows of data representing 6000+ distinct loans. I did a coxph() regression on it (see call below), but a subsequent survfit() call on the coxph object is almost certainly wrong. It gives n=6 when it should be more like 6000+ (I think) > survfit(resultag) Call: survfit.coxph(object = resultag) n events median 0.95LCL 0.95UCL 6 489 Inf

Dear R useRs, Sorry for this foolish question, but I can't find how to escape the * character when using grep : > grep("-", c("/3", "2*3", "4-4")) [1] 3 > grep("/", c("/3", "2*3", "4-4")) [1] 1 > grep("*", c("/3", "2*3", "4-4")) Erreur dans grep("*",

Hello All, Below is some sample survival analysis code. I'd like to able to get the results from print(gehan.surv) into a matrix or data frame, so I can manipulate them and then create a table using odfWeave. Trouble is, I'm not quite sure how make such a conversion using the results from a print method. Is there some simple way of doing this? Thanks, Paul require(survival)

Hello useRs, I'm trying to install bioconductor on ubuntu edgy eft and R 2.4.0. I have some error messages during installation, in particular for the package "affy" : "Error: package 'affy' required by 'makecdfenv' could not be found" I have tryed to install 'makecdfenv' with the command : getBioC("makecdfenv") But I have this message

Dear useRs, I'm trying to create a barplot like so: x=matrix(1:10,2,5) barplot(x,leg=c("left","right"),besid=T) The legend is placed in default position topright, however the data are plotted there too. I tried controlling the legend position by adding x="topleft" but this results in an error that x matches multiple formal arguments. Leaving out the legend

Hello useRs, I'm trying to use the Roxygen package. Here my code file : #' A packge to check Roxygen's sanity #' @name helloRoxygen-package #' @docType package NA And my R code to generate the package : library(roxygen) package.skeleton("helloRoxygen", code_files = "roxy.r", force = T) roxygenize("helloRoxygen", "helloRoxygen",

Hi all! I am trying to extract output information from the survfit function in order to generate a matrix of select output for multiple factors. Specifically, I am interested in extracting the number of events (in the output below: 106, 2, 3). The variable names represented in my function (ee) are shown below, but none of those variables correspond to the column of events as shown in the output.

Hello, I create a plot from a coxph object called fit.ads4: plot(survfit(fit.ads4)) plot is located at: https://www.dropbox.com/s/9jswrzid7mp1u62/survfit%20plot.png I also create the following survfit statistics: > print(survfit(fit.ads4),print.rmean=T) Call: survfit(formula = fit.ads4) records n.max n.start events *rmean *se(rmean) median 0.95LCL 0.95UCL 203.0

Dear R-ers, I was trying to read in a large sas7bdat file (size 148094976 bytes) using 'read.sas7bdat()', but it did not read in the data correctly. E.g., the first 5 rows will come out like this (I'm omitting other columns to keep it readable): PERSON_ID age 1 5.399114e-315 5.329436e-315 2 5.399114e-315 5.328302e-315 3 5.399114e-315 5.332026e-315 4

Un texte encapsul? et encod? dans un jeu de caract?res inconnu a ?t? nettoy?... Nom : non disponible Url : https://stat.ethz.ch/pipermail/r-help/attachments/20060615/8bdef5dc/attachment.pl

Hi I have just started to have a look at R. I have used most stats software packages and can use perl, visual basic etc. I am interested in how well it handles lots of output e.g. tables or charts. How would you get lots of output most easily and quickly into a Word document? Sharon Snowdon ------------------------------------------------------------------------ - FIGHT BACK AGAINST SPAM!

essai <- odbcConnect("ORESTE_prod", uid="osis_r", pwd="12miss15" ,case="oracle") > sqlTables(essai)$ORESTE ... 1315 <NA> ORESTE S_PROFESSIONS_OLD TABLE <NA> 1316 <NA> ORESTE S_PROVENANCES TABLE <NA> 1317 <NA> ORESTE

I would like to create a function to convert data based on a class using as.numeric Similarly, using a plot, I do: plot.essai <- function(x, ...) {return(x*2)} d <- 10 class(d) <- "essai" plot(d) It works: [1] 20 attr(,"class") [1] "essai" Now same with as.numeric: as.numeric.essai <- function(x, ...) {return(x*2)} as.numeric(d) It does not work:

Hi all, I''m trying to have the exec resource write a file after the command but it don''t. here is the resource declaration class gepet { notify { ''begin'':} file { ''/root/essai/html'': ensure => present, content => "Wrote By Yves Nton", notify => Exec[''test''], } exec { ''test'': path

Hello list, I have used scan function to import data into R. I have done some analysis and find strange results. I have found my problem : when importing data with scan, this can slightly modify the data : > write(c(0.251,3.399,-0.481,0.266),"essai.txt") > scan("essai.txt") Read 4 items [1] 0.251 3.399 -0.481 0.266 > print(scan("essai.txt"),17) Read

Salut alex. J''ai une question a propos de wx::statictext(wxruby2) est-il possible de mettre les accents pour la langue française?, car pour l''instant je ne peut pas mettre l''accentuation alors que ça marche bien avec "wxruby". merci Sebastien _______________________________________________ wxruby-users mailing list wxruby-users@rubyforge.org