similar to: Calling R from C

Dear All, When installing the Ruuid package (from Bioconductor) from sources on my MAC (OS X 10.3.5, R version 2.0.0) I get the following errors: m00245:~ ivisser$ R CMD INSTALL -l /Users/ivisser/Library/R/library/ /Users/ivisser/Desktop/Ruuid * Installing *source* package 'Ruuid' ... loading cache ./config.cache checking for glib-config... no checking how to run the C preprocessor...

Hi All, Does someone have an idea of how to cleverly convert a categorical timeseries into a transition matrix? Ie, I have something like: x<- c(1,1,2,1,1,2,2,2,1,2), And I want a matrix with counts and/or probabilities: > tr <- matrix(c(2,3,2,2),2,2) > tr [,1] [,2] [1,] 2 2 [2,] 3 2 Meaning that there are two transitions from 1 to 1, two from 1 to 2, three from 2 to 1

Replaced the previous HostWrapper class with the new HostAgent class, which more closely resembles the style of the ProcessorsAgent class. Deleted the HostWrapper class entirely. Refactored the daemon entry point to reduce the number of methods invoked in order to start or stop the HostAgent instance. Moved the NICWrapper's setupQMFObject method from private to public so that it can be

Hello, I am new to R on Linux (and to LINUX), running a 1.9.1 on a Linux MDK10.0. When updating or installing different packages, I get messages like this (under), the package doesn't install. Can anyone help me? I know this is all to little information, but I don't know were to start. I think there is something wrong in how or were the C++ or fortran compilator is installed?? Thanks, Geir

Hi, Gang: I remember there were different voices when you check-in the code. I agree with them although I didn't reply your mail in open64's mailing list. In the transformation you illustrate, it involves two operations: 1) promote WHILE-loop into DO-loop (i.e noncountable loop to countable loop) 2) get rid of trip-count dec/inc and compare. 1) is irrelevant to HW loop.

Hi, When running R CMD check I'm getting a number of errors that I don't quite follow and don't know where to start looking for an answer, any hints appreciated. R CMD check trunk * checking for working latex ... OK * using log directory '/Users/ivisser/Documents/projects/ depmixProject/depmixNew/rforge/depmix/trunk.Rcheck' * using R version 2.6.2 (2008-02-08) * checking

I am the designer for open64 hwloop structure, but I am not a student. Hope the following helps: To transform a loop into hwloop, we need the help from optimizer. For example, while(k3>=10){ sum+=k1; k3 --; } into the form: zdl_loop(k3-9) { sum+=k1; } So, we introduce a new ZDLBR whirl(open64 optimizer intermediate) operator, which represents the loop in whirl as:

Hi Tom, I am not entirely sure what the problem, you haven't been very specific. If you want general linear constraints on your parameters, ie linear combinations of parameters summing to some value, constrOptim may be of help. hth, ingmar Ingmar Visser Developmental Processes Research Group Department of Psychology University of Amsterdam http://users.fmg.uva.nl/ivisser/ -----Original

Hi all, I'm writing a vignette for my package, and I would like to include some of the package help files in there as well. Is there an easy way of doing so? I tried using R CMD Rdconv to generate latex files from .Rd files but I am not sure how to include these into a .Rnw file (ie the vignette source). The resulting file from Rdconv do not readily compile using latex ... The other option I

I had written a vignette and included a \usepackage{Rd} command to make it possible to include latex'ed Rd files in the vignette. However, when loading Rd.sty texShop produces the following error: l. 180 ...d}[1]{\ifmmode\bm{#1}\else\textbf{#1}\fi} This is on Max OS X 3.9 and R 2.0.1 Has anyone seen this before and/or is it problematic? I'm not sure whether the output suffers from this

Is there a package in R that handles general linear (in-)equality + box constrained optimization? If it is not there, could anyone advise me which way to go? And/or point me to packages that solve these problems partially? best, ingmar -- Ingmar Visser Department of Psychology, University of Amsterdam Roetersstraat 15, 1018 WB Amsterdam The Netherlands http://users.fmg.uva.nl/ivisser/ tel:

Dear R community, I am looking for an R package or other software to study hidden Markov models. I need to be able to incorporate multivariate emissions and covariates for the transition probabilities. The msm package seems almost perfect for my purpose, but I do not think it allows multivariate emissions. I will be grateful for your suggestions. All the best, -- Emilio A. Laca One

Dear all, does anyone have r code to perform model-averaging of regression parameters by Akaike weights, and/or to do all-possible-subsets lm modelling that reports parameter estimates, AICc and number of parameters for each model? I have been looking for these in the archive but found none. (I am aware that many of you would warn me against these methods advocated by Burnham and Anderson

-- R Help List -- I am looking for a bivariate normal cdf routine in R. I have some fortran routines for this, which appear to be based on 15-point quadrature. Any guidance/suggestions on making these in loadable R-functions would be appreciated. Thanks, Dan =-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-= Daniel A. Powers, Ph.D. Department of Sociology University of Texas at Austin

Kia ora I'm a using lme (from nlme package) with data similar to the Orthodont dataset and am getting positive log-likelihoods (>100). This seems usual and I wondered if someone could offer a possible explanation. I can supply a sample dataset if requested, but I feel almost certain that this question has been asked and answered recently. However, I can find no trace of it in the mail

Full_Name: D Kreil Version: 2.1.1 OS: HP-UX B.11.23 U ia64 0029870451 unlimited-user license Submission from: (NULL) (62.178.15.60) I sadly get a core-dump during installation, when it tries to lazyload package survival. Any idea what to do about this? Best regards, D. ... include -fPIC -g -O2 -c survindex2.c -o survindex2.o gcc -I/bi/common/src/R-2.1.1/include

Hello, I am relatively new to using R. I am using R version 2.8.0. I have a program that downloads stock data from Yahoo! Finance and stores it to a text file on my hard drive. The text file contains the date, opening price, high price, low price, closing price, volume and adjusted price (i.e., adjusted for dividends and splits). I want to read and manipulate the data in R. However, when I

Hi Shuxin, Eli, On 22/11/2012 03:19, Shuxin Yang wrote: > Hi, Ivan: > > My $0.02. hasZeroCostLooping() disabling unrolling dose not seem > to be > appropriate for other architectures, at least the one I worked before. I appreciate your feed-back. Could you give an example where building a hw loop is not appropriate for your target? > > You mentioned: >

Thanks to Roger Bivand, my problem was solved. binutils 2.14 was updatet to binutils 2.15, as indicated under. Geir Helge Systad Norwegian Institute for Nature Research Arctic Ecology, Polarmilj??senteret, N-9296 Troms??, Norway Adress aug-04 to feb-05: Albert Pettersonsvei 13, N-5750 Odda fax +47 85 03 82 14 phone +47 53 64 24 94 mobil +47 91 63 70 55 E-mail: geir.systad at nina.no

Hi shuxin, Promote while-loop to do-loop is the job of loop induction recognized, not this transformation. The scalar transform for hwloop in optimizer is for that it is a trouble to discriminate trip counting code with the real production code stuff and do the elimination in cg, we have to write customized code to handle this general stuff in ervey targets. So, we take the help from optimizer