Displaying 20 results from an estimated 2000 matches similar to: "R CMD check barfs at 'suggested' package"
2005 Oct 11
4
Q: Suggestions for long-term data/program storage policy?
Dear list,
we are a statistical/epidemiological departement that - after a few
years of rapid growth - finally is getting around to formulate a
general data storage and retention policy - mainly to ensure that we
can reproduce results from published papers/theses easier in the
future, but also with the hope that we get more synergy between
related projects.
We have formulated what we
2004 Jan 20
1
Re: Need help on how to list functions from a loaded package...
To All
How does one get a list of functions from a loaded package so that one can
then get the appropriate help for each of the functions. Currently my
method is
based on a lot of trial-and-error.
Here's an example of what I mean...
>From this forum I learn that an interesting package called "multtest" exists
on Bioconductor.
I then use R Console's "Packages" --
2003 Apr 24
1
Windows: Graphics appear only partially
Dear all,
we have installed R in one of our computer labs. Running demo(grpahics)
works, kindof, in that it produces all the usual plots without crashing, but
the plots are incomplete: no color wheel, no pie chart, no boxplots, just
some labelling, titles, and in rare cases, axes. We have tried this with
both 1.7 and 1.6.2, with the same results. The computers are running Windows
2000, with
2002 Mar 06
3
Problem in .First.lib
Hello!
I downloaded a package "multtest" (from bioconductor.org) in R, and
installed it by 'R CMD <package>' (after unzipping and taring).
The problem is when I say 'library(multtest)' in R, the following error is
generated:
Error in dyn.load(x, as.logical(local), as.logical(now)) :
unable to load shared library
2005 Oct 10
1
bug loading libraries with winXP and 2.2.0 but not 2.1.1 (PR#8200)
Full_Name: Ken Kompass
Version: 2.2.0
OS: winXP pro (2002 version, SP2)
Submission from: (NULL) (128.252.149.244)
Using R2.2.0 I get this error msg when loading certain bioconductor libraries
(depending on whether the library contains file named "all.rda" in R folder of
library) :
> library(multtest)
Error in open.connection(con, "rb") : unable to open connection
In
2010 Nov 12
1
installing dependencies: binary vs source
Hi,
Installing from binaries on Windows:
> install.packages("multtest")
Warning: dependency 'Biobase' is not available
trying URL
'http://cran.fhcrc.org/bin/windows/contrib/2.12/multtest_2.6.0.zip'
Content type 'application/zip' length 1645590 bytes (1.6 Mb)
opened URL
downloaded 1.6 Mb
package 'multtest' successfully unpacked
2006 Feb 01
1
Rd files with unknown sections
Hi,
With recent versions of R-devel, "R CMD check" complains about
some "Rd files with unknown sections".
hpages at gladstone:~> R CMD check multtest_1.9.4.tar.gz
...
...
* checking Rd files ... WARNING
Rd files with unknown sections:
/home/hpages/multtest.Rcheck/00_pkg_src/multtest/man/boot.resample.Rd:
notes
2011 Nov 30
1
install "multtest" and "preprocessCore" packages in Bioconductor library
Hi Nguyen,
> Subject: [R] install "multtest" and "preprocessCore" packages in
> Bioconductor library
> Date: Wed, 30 Nov 2011 09:57:36 -0800
> From: UyenThao Nguyen <unguyen at tethysbio.com>
> To: r-help <r-help at r-project.org>
> CC: uth.nguyen at ucdavis.edu <uth.nguyen at ucdavis.edu>
>
> Hi All,
>
> I've tried to
2005 Oct 18
1
RMySQL problems
I get the following error trying to connect to a MySQL database:
> library(RMySQL)
Loading required package: DBI
> drv<-dbDriver("MySQL")
> con<-dbConnect(drv, user="hothand", password=xxx,
host="localhost", dbname="hh03");
Error in mysqlNewConnection(drv, ...) : RS-DBI driver: (could not
connect hothand at localhost on dbname
2004 Jan 20
0
Re: Need help on how to list functions from a loaded pack age...
You can get help on the whole package by
> help(package="multtest")
which is likely pretty close to what you want. There's the index etc for the
package on the web as well. You can also just look in the package's
installation directory. If it's loaded you can do an ls(2) say if it loaded
in position 2, to get all objects in the package.
Reid
-----Original Message-----
2005 Aug 15
2
R CMD check failure on minimal code
I have a peculiar problem that I'm sure is a simple one, but I can't figure
out what my mistake is. Can someone enlighten me? I have a simple file,
class.R:
##
setClass("abc",representation(a = "character", b = "ANY"))
I have a package directory ExpressCGH1 made with package.skeleton. The
package happily builds and installs, but R CMD check fails with
2006 Apr 19
2
par(tmag) question
Dear list,
I'm trying to understand the graphical parameters by a systematic exploration
of the par() function (if you are interested by the result it's here
http://pbil.univ-lyon1.fr/R/fichestd/tdr75.pdf, the comments are all in
french but it's pure R code under Sweave).
I have a problem with par(tmag) illustrated by the following code:
2006 Mar 09
1
lsa and Rstem?
Dear r-helpers,
I can't get lsa to run because:
> library(lsa)
Loading required package: Rstem
Error in library(pkg, character.only = TRUE, logical = TRUE, lib.loc
= lib.loc) :
'Rstem' is not a valid package -- installed < 2.0.0?
In addition: Warning message:
cannot create HTML package index in: make.packages.html()
> install.packages('Rstem')
Warning in
2005 Jul 19
1
S4 Dispatching
Is it possible for S4 to (continue) dispatch to a class
created during dispatching? The code below doesn't work;
is this not possible or have I ommitted something?
Concept was to create a SEXP with R_AllocatePtr, give it
a class attribute, and continue dispatch. Example code
below omits multiple parameters that can be different types.
Essentially, any parameter would be converted to an
2006 Mar 16
3
sub returns garbage (PR#8687)
Full_Name: Todd Bailey
Version: 2.1
OS: Mac OS-X 10.4.3
Submission from: (NULL) (87.112.79.124)
sub returns garbage in some strings when replacing something with nothing and
fixed=TRUE. For example:
> a=c('hello','hello'); sub('lo','',a,fixed=TRUE)
[1] "hel" "hel\0\0"
> a=c('hello','hello');
2005 Oct 26
1
Pb encountered with demos
Hi all,
I've just installed R on my Mac & PC.
The base demo run fine.. But I'm encountering several pb with some packages
(installed using CRAN binaries using the menu)
- Lattice:
> demo(lattice,package='lattice')
demo(lattice)
---- ~~~~~~~
Type <Return> to start :
> require(grid)
[1] TRUE
> old.prompt <- grid.prompt(TRUE)
> old.settings
2005 Oct 29
1
dyn.load() error: bad external relocation length
R-helpers,
Is there an easy way to call an external (C) program using .C or .Call
without including the code in a package. I know how to do it using
system(), but that doesn't seem to be a permanent or portable solution.
Initially I tried:
.Call('filepath.to.c.function', arg1)
and got this error:
Error in .Call("filepath.to.c.function", "arg1", :
2006 Feb 08
1
invalid graphics state using dev.print (fwd)
On Mon, 6 Feb 2006 18:12, Simon Urbanek wrote:
> On Feb 6, 2006, at 5:24 PM, Paul Roebuck wrote:
>
>> Tried on R-Sig-Mac with no responses, but I need some kind
>> of answer.
>> [...]
>> Does the following work on your system?
>
> Interesting, no, it doesn't either. For png and pdf I use
> Quartz + quartz.save (it produces much nicer results) so
> I
2005 Jul 13
1
unexpected par('pin') behaviour
hi everybody,
I noticed the following: in one of my scripts 'layout' is used to
generate a (approx. square) grid of variable dimensions (depending on
no. of input files). if the no. of subplots (grid cells) becomes
moderately large (say > 9) I use a construct like
###layout grid computation and set up occurs here###
...
opar <- par(no.readonly = T);
2005 May 18
1
source-only package, but still: Error: package 'simple' was built for powerpc-apple-darwin7.9.0
I have a number simple R functions written for the biologists I work
with. These functions will evolve, and the documentation will get
steadily better. I hope to put them in a package on a local
webserver, along with lots of help files, so that the users can easily
update their installation.
The functions are pure R, with no compiled code, but alias, I cannot figure out
how to build this