similar to: Install Rmpi on Fedora with mpich2 installed.

R-users, My question is related to earlier posts about benefits of quadcore over dualcore computers; I am trying to setup a cluster of windows xp computers so that eventually I could make use of 10-20 cpu:s, but for learning how to do this, I am playing around with two laptops. I thought that the package snow would come handy in this situation, but to use snow, I would probably need to install

Hello everyone im trying to install Rmpi library on centos 6. I have already installed mpich2 1.4 [root@localhost ~]# R --version > R version 2.15.1 (2012-06-22) -- "Roasted Marshmallows" > Copyright (C) 2012 The R Foundation for Statistical Computing > ISBN 3-900051-07-0 > Platform: x86_64-redhat-linux-gnu (64-bit) [root@localhost ~]# mpich2version > MPICH2 Version:

I am running R 2.14.1 on a Windows XP (32 bit) system, and am trying to install the package 'Rmpi' to allow me to parallel process on all cores of a quad-core PC (and if that works well, I want to add extra slaves from a dual-core laptop). Rmpi appears to install OK (see below), but I am encountering the following error when I try and load the package: > utils:::menuInstallLocal()

Hello R-help! I am a systems administrator for the University of Southern California. I take care of it's general-purpose research cluster, and have recently been asked to provide access to a parallelized R platform. I do not have any previous experience using R, and have only ever had to do anything more then 'yum -y install R'. We have a myrinet MPI network, and use mpich1 as our

Dear R People: I am having some trouble with the snow package. It requires MPICH2 and Rmpi. Rmpi is fine. However, I downloaded the MPICH2 package, and installed. There is no mpicc, mpirun, etc. Does anyone have any suggestions, please? Thanks in advance! Sincerely, Erin Hodgess Associate Professor Department of Computer and Mathematical Sciences University of Houston - Downtown mailto:

Hi guys, I've spent a few days trying to install Rmpi with no luck. I originally tried using mpich, moved on to mpich2, and then to openmpi. I've gotten the furthest with openmpi, though am still running into this problem and can't figure it out. Can someone help!? Thanks so much in advanced. I'm using an HP Envy laptop with Ubuntu 12.04. Output is below, with the error at the

Hello, the package snow is not working on a windows cluster with MPICH2 and Rmpi. There is an error in makeCluster: launch failed: CreateProcess(/usr/bin/env "RPROG="C:\Programme\R\R-2.5.1\bin\R" "OUT=/dev/null" "R_LIBS=" C:/Programme/R/R-2.5.1/library/snow/RMPInode.sh) on 'cl1' failed, error 3 - Das System kann den angegbenen Pfad nicht finden. I

Hello everybody, I am trying to install Rmpi on 64-bit HP-Proliant server. I am facing the following error: * Installing *source* package 'Rmpi' ... Try to find mpi.h ... Found in /usr/local/mpich-1.2.7p1/include Try to find libmpi or libmpich ... Found libmpich in /usr/local/mpich-1.2.7p1/lib Try to find liblam ... checking for main in -llam... no liblam not found. Probably not LAM-MPI

I just installed Rmpi on my 64-bit Ubuntu Hardy Heron OS and using the following without errors: "R CMD INSTALL Rmpi_0.5-5.tar.gz --configure-args=--with-mpi=/usr/lib64/openmpi" Immediately at library(Rmpi) I get the segfault displayed in my complete output below. My first thought is that perhaps I used the wrong library for openmpi, but with my 64 bit install it seemed like a logical

Hi I have managed to install MPICH2 and Rmpi on my Windows 7 machine. I can also run the following code > library(Rmpi) > mpi.spawn.Rslaves() 4 slaves are spawned successfully. 0 failed. master (rank 0, comm 1) of size 5 is running on: MyMaster slave1 (rank 1, comm 1) of size 5 is running on: MyMaster slave2 (rank 2, comm 1) of size 5 is running on: MyMaster slave3

Hi I have managed to install MPICH2 and Rmpi on my Windows 7 machine. I can also run the following code > library(Rmpi) > mpi.spawn.Rslaves() 4 slaves are spawned successfully. 0 failed. master (rank 0, comm 1) of size 5 is running on: MyMaster slave1 (rank 1, comm 1) of size 5 is running on: MyMaster slave2 (rank 2, comm 1) of size 5 is running on: MyMaster slave3 (rank 3, comm

Hi, I've been trying here to install Rmpi on an SGI IA-64 machine with 64 processors, running SuSE Linux Enterprise Server 9, R 2.4.0 and lam-mpi 7.1.3. While I've read of similar problems on this list, I think I've got an entirely new set of error messages to contribute (see below). I'm not sure what the actual error is and what the @gprel relocation message is about. Any help

Dear R People: Here are my latest attempts for Rmpi: This is the list of locations for mpi.h: /home/faculty/hodgess/mpich2-1.0.5p4/src/include/mpi.h /home/faculty/hodgess/include/mpi.h /home/faculty/hodgess/lam-7.1.4/romio/adio/sgi/mpi3.1/mpi.h /home/faculty/hodgess/lam-7.1.4/share/include/mpi.h /usr/src/linux-2.4.21-20.EL/drivers/addon/fusion_20505/lsi/mpi.h

On FC10 with openmpi and mpich2 installed, the command "R CMD INSTALL Rmpi_0.5-7.tar.gz --configure-args=--with-mpi=/usr/lib64/openmpi" (or /usr/lib64/mpich2) fails with the error ''cannot find mpi.h". Doing a (s)locate indicates no header file labeled as such. Would appreciate any trailheads. TIA, V. -- Vince Fulco, CFA, CAIA 612.424.5477 (universal) vfulco1 at

Hi, I am using a cluster with LAM 7.1.3/MPI 2 and R 2.6.0. Rmpi version 0.5-5 is working very well. Now I have tested "Rmpi 0.5-6". During spawning the Rslaves I get an error: MPI_Error_string: error spawning process > sessionInfo() R version 2.6.0 (2007-10-03) x86_64-unknown-linux-gnu locale:

Hello, I've installed R on my RHEL3 cluster and I am trying to get Rmpi to work properly. R is installed using the following ./configure --prefix=/home/apps/R-2.2.0 I installed snow using R CMD INSTALL /home/apps/snow And finaly Rmpi R CMD INSTALL /home/apps/Rmpi --configure-args=--with-mpi=/path/to/lam There were no errors or warnings upon installation. However when i perform the test

Dear all, I have a large dataset of randomly generated weighed sample for which I wish to compute a kernel density estimate. I have used the "np" package successfully for smaller datasets, however for the larger ones, they take too long when using the cross validation options for bandwidth selection ("cv.ls" or "cv.ml"). Of course, they are much quicker with

Has anybody tried to use Rmpi with the OpenMPI library instead of LAM/MPI? LAM appears to be somewhat hardcoded in the Rmpi setup. Before I start to experiment with changing this, has anybody else tried Rmpi with non-LAM MPI implementations? Dirk -- Hell, there are no rules here - we're trying to accomplish something. -- Thomas A. Edison

I am trying to build Rmpi on Suse 10.2 linux. While I would like to use the RPM version of liblam-7.1.2, I have not been able to do so. It seems that Rmpi makes some pretty strong assumptions when trying to guess the MPI version. Has anyone successfully built Rmpi against lam-7.1.2 recently using R-2.6.0? If so, can you give some pointers about where the libraries and header files need to be

Hi R Gurus. I'm trying to install the Rmpi package. Here are the errors: checking for stdint.h... yes checking for unistd.h... yes checking mpi.h usability... no checking mpi.h presence... no checking for mpi.h... no Try to find libmpi or libmpich ... checking for main in -lmpi... no libmpi not found. exiting... ERROR: configuration failed for package 'Rmpi' ** Removing