similar to: SJava linux installation problems

Hi. Day three and I’m still struggling with this. Any advice to overcome the final hurdle will be enormously appreciated. I now have all the right Java applications etc. in their right places and have managed to get rid of most errors but still get this: — Making package SJava — Building JNI header files... adding build stamp to DESCRIPTION running src/Makefile.win (cd .. ;

I failed to build SJava dure to teh error below. Any ideas? # R CMD INSTALL -c SJava_0.68-0.tar.gz * Installing *source* package 'SJava' ... checking for java... /opt/j2sdk1.4.2_06//bin/java Java VM /opt/j2sdk1.4.2_06//bin/java checking for javah... /opt/j2sdk1.4.2_06//bin/javah Looking in /opt/j2sdk1.4.2_06/include Looking in /opt/j2sdk1.4.2_06/include/linux checking for g++... no

Apologies, I am a non-techie so am finding installing SJava (which I need for RMAGEML) very frustrating indeed. I am running rw2001 on WindowsXP with Java - jre1.5.0_02. Could somebody please explain to me step-by-step how to install it as I have tried all the help files. The website’s (HYPERLINK "http://www.omegahat.org/RSJava/"http://www.omegahat.org/RSJava/) instructions for

I need to generate 100 I.I.D samples from an exponential distribution. I use rexp(100,parameter). Is there anyway to specify a seed to determine the first input for the uniform random number generator used to generate these exponentials? -Dhiren

Hi, Did anyone sucessfully install SJava package to R and was able to call R function from java in redhat linux8.0? I tried several days it still give me error either in libR.so or libjvm.so. for example, I can compile JavaRCall.java(a example with the SJava package) without problem. When I run it, it can connect to R and accomplish part of results, but fail for other calls. The outputs are:

Hello: Are there any libraries that will do a subset selection for glm's? I looked through leaps, but seems like it is specifically for linear regressions. Thank you. -Dhiren

I have a dataset with transactions and a timestamp at which they occoured during a day. The time stamp is in the format YYYY/MM/DD hh:mm:ss. I would like to plot a timeseries of the transactions to see if there is a particular time in the day when there is a spike in transactions. Ofcourse the YYYY/MM/DD can be dropped since I am monitoring activity for the day and the actual date is

Hi,all, I have a problem about launching SJava in R from external application (Cytoscape). My R version is 2.1.0 and Sjava version is 0.68. R is installed by issuing 1. configure --enable-R-shlib 2. make 3. make check 4. make install SJava is installed by issuing "R CMD INSTALL -c SJava_version_.tar.gz". The LD_LIBRARY_PATH is set in .bash_profile by

..sorry for this "repeated" off-topic question, but i look for any suggestion in the manuals, find nothing related? library(Sjava) Error in firstlib(which.lib.loc, package) : JAVA_HOME is not set Error in library(Sjava) : .First.lib failed ...what i have to done? many thanks & regards,christian

Full_Name: Heinz Grimm Version: R1.5.1 OS: Windows NT Submission from: (NULL) (195.65.178.178) Line 11 is: "DLLLIBS=-L'c:/jdk1.3/lib' -L$(JAVA_HOME)/jre/bin/hotspot...." should be: "DLLLIBS=-L$(JAVA_HOME)/lib -L$(JAVA_HOME)/jre/bin/hotspot...." Line 59 is: " (cd .. ; ./configure.win $(RHOME))" should be: " (cd .. ; sh ./configure.win $(RHOME))"

Dear all, I have an error message installing SJava package. So I searched web site(google) and R-mailing list to find a similar error message. But I couldn't find it. I installed R-2.1.1 like this on Fedora Core4 1) /configure --enable-R-shlib --with-libpng --with-jpeglib 2) make -> make check -> make install and then issuing on shell prompt (red lines are error messages) R CMD

Dear duncan, I'm writing to ask you for some help about compiling SJava. I encounter some errors when I compiled SJava on Window XP: Building JNI header files... Extracting the classes from Environment.jar /jdk1.3/bin/jar: not found RForeignReference After executing command "sh ./configure.win C:/Program Files/R/R-2.7.2", I modify the JAVA_HOME in file "$RHOME/

Hello: I have a matrix 'dat' with 2 columns. I have the following code: for (i in 1:nrows(dat)) { if (dat[i,1] < dat[i,2]) { dat[i,2]<-0 } else { dat[i,2]<-1 } Is there a way to accomplish this without the for loop? Thank you. -Dhiren

Dear all, Maybe this has something to do with R crashing? When my R version crashes, there is Rgui.exe still running in the background (i.e. W2K's task manager recognises it only as a process, which apparently is using almost 100% of the CPU). I can reproduce that by "using" the SJava package (from Brian Ripley's homepage, as suggested on http://www.omegahat.org/RSJava/).

Hi list, I am having a problem in SJava. while loading the library I get the folowing error. > library(SJava) Error in dyn.load(x, as.logical(local), as.logical(now)) : unable to load shared library "/usr/lib/R/library/SJava/libs/SJava.so": libRSNativeJava.so: cannot open shared object file: No such file or directory Error in library(SJava) : .First.lib failed for

hello, I am trying to install SJava on Windows XP as described on http://www.omegahat.org/RSJava/: at the level configure.win: $rhome/sjava/configure.win returned "argument 'c:/...' ignored" When i tried to install like the readme file, it returned in R > library(SJava) using JAVA_HOME = C:\Program Files\Java\j2re1.4.2_04 > .JavaInit() Error in .JavaInit() :

Dear r-helpers, I have been trying to invoke R from Java in a Windows 2000 computer (unfortunately). All my environment variables seem to be properly set, everything seems to be in order, but I obtaining a Fatal error: unable to open the base package error window. Also, the output of the invoker is Loading RInterpreter library R_HOME: R_HOME=C:/Programas/R RVersion: R_VERSION=1.6.1 whereas

Hi, I installed SJava 0.66-1 on my linux RH 7.2 machine. I am using R-1.7.1. I set LD_LIBRARY_PATH up then called library(SJava) and it was fine. But when I called .JavaInit(), I got weird error that states it could not find java/lang/Hashtable. The session is below and shows my java configuration. I am using j2sdk1.4.2_01 from Sun. Thank you very much. Weiming Zhang > .javaConfig

Hi I'm trying to use SJava and I have troubles. I try to run examples from "Calling R from Java" but,I have an error that "fatal error: enable to open the base package" I heard SJAVA bug, so,could you send me your compiled SJava package with the modified REmbed.c because in Windows i'm not able to recompile!!! --example package org.omegahat.R.Java; public

Dear All, <<OS and software>> R-1.81 j2sdk1.4.0_03 SJava_0.66-1 Windows NT4.01 I try to run R from Java with SJava and I seem to have the same problem as discussed before in this mail list a few month ago: https://www.stat.math.ethz.ch/pipermail/r-help/2003-May/031960.html https://www.stat.math.ethz.ch/pipermail/r-help/2003-May/031962.html