similar to: a question about read.marrayRaw

In my package, I create a new method for plot with the following signature: setMethod("plot", signature(x="marrayNorm", y="formula"), plot.ma) where marrayNorm is a class defined in the marray package. After building and installing my package, I get the following warnings when I load my package (with library(maVis)): Warning messages: 1: In the method signature

Hi all, is it possible to modify the way a graph obtained through image(graphics) is filled, I mean starting filling the graphical matrix by row from the upper-left rather than by the lower-left cell... In many cases, it can be usefull to have a representation of the data spatialy corresponding to a real support, as it is the case with the function image(marray) from Bioconductor packages, which

Hi, I am wirting a R script to process some data routinely and have a problem when try to get the content of object in ls()? Here is the script: > ls() [1] "a" "b" [3] "files.num" "fll92_1a_gpr" [5] "fll92_1a_gpr_norm" "fll92_1a.gpr.norm.scale" [7] "fname" "fullnames" [9] "gal" "galfile" [11]

Dear R and Bioconductor Helpers, I am using a package called RankProd under Bioconductor to analysis my Y98 (yeast) microarray data. I had no problem following the example in the vignette but got stocked when I tried to analyze my own data. When I tried to run the following command, RP.out <- RP(rrf.sub, rrf.cl.sub, gene.names = y98.gnames, rand = 123) I got the following response: Rank

Hi Forgive my ignorance. I am selecting a column of a data.frame using the column name, and I want to know what the resulting column "is". My data frame is called "submin" and the column name is held in a variable called "display.gname" Eg: > is.data.frame(submin) [1] TRUE > is.data.frame(submin[,display.gname]) [1] FALSE >

Hello: I am a novice R user, but I have been working my way through the manuals / tutorials, ... I have R / Deducer up and running, and know the basics. I want to analyze a microarray (gene expression) dataset. I need to input the data into R as a multidimensional (multi-way) array, something on the order of 15,000 x 3 x 8 x 2 [genes x replicates x time points x treatments] I've

Evening everyone. Im currently having some problems using the smbldap tools to add groups, users and such. Im using Samba 3.0.1pre3 with OpenLDAP 2.1.22. I have setup the required files: /etc/nsswitch.conf, /etc/ldap.conf and /etc/samba3/smb.conf I also configured smbldap_conf.pm as well to reflect my setup. (Quick side note: I have two of these files: one in /etc/samba3 and the other in

Hello! I'm geting errormessage, when I start sldap on commandoline: amd:/usr/lib/openldap # /usr/lib/openldap/slapd /etc/openldap/schema/samba.schema: line 432: AttributeType not found: "gidNumber" I think, I must create a new group with a gid. But is the groupname sambaGroupMapping? my samba.schema-line 432:(MUST...): ## ## Group mapping info ## objectclass (

Hi Samba list, I have a Linux Samba PDC file server with a separate ldap machine backend. Every thing works perfect. but the problem is that when I do a command on the samba server: # getent group | grep 1033 It gives me: gname:x:1033:usr1,usr2,usr1,usr2,usr3 Some of the user ids show up twice. Why? I checked ldap database and found that usr1,usr2 and usr3 show up only once in

Dear R-Helpers, I have a data.frame (df) and the head of data.frame looks like ProbeUID ControlType ProbeName GeneName SystematicName 1665 1577 0 pSysX_50_22_1 pSysX_50 pSysX_50 5422 5147 0 pSysX_49_8_1 pSysX_49 pSysX_49 4042 3843 0 pSysX_51_18_1 pSysX_51 pSysX_51 3646 3466 0 sll1514_0_2 sll1514 sll1514

Hi all I have just downloaded the sma package from CRAN. On installing on my linux machine, I get the message > library(sma) > data(MouseArray) Warning message: file 'MouseArray.RData' has magic number 'RDX1' Use of save versions prior to 2 is deprecated Hereafter, MouseArray is not found: > MouseArray Error: object "MouseArray" not found We were

Hello all, I am implementing support for .debug_names section (which is introduced in DWARFv5 standard as replacement for .debug_pubnames and .debug_pubtypes). The question is: should usage of DWARF version 5 force generation of .debug_names instead of .debug_pubnames or we can make it just default behavior and provide user with the interface (cmd switch) to use other DWARFv5 features but

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I reported the following vulnerability to AUSCERT, but they weren''t interested. People on this list might be, though! GNU tar is lazy about file creation modes and file owners when unpacking a tar file. Because GNU tar defaults to creating files owned by the userid running tar when the username is not found on your system, it can be possible to inadvertantly create setuid root

Hi, R-help, I have a group of data from RNA-seq want to be analyzed by Fisher's exact test in R. I want to compare the significant difference of about 30,0000 individuals in two different samples, and I have no idea how to use R, so could you please give me some suggestions or the scripts for Fisher's exact test? Thank you very much. Best, Guanfeng Wang [[alternative HTML version

Hi -- I'm experiencing problems when using rsync between two different machines. Details follows: Both machines are running 2.4.23, rsync versions on both are identically configured versions of 2.5.7: rsync version 2.5.7 protocol version 26 Copyright (C) 1996-2002 by Andrew Tridgell and others <http://rsync.samba.org/> Capabilities: 64-bit files, socketpairs, hard links, symlinks,

Hello, We have just migrated a server from sun solaris 8 to sun solaris 10. In the old machine we had a Samba 3.0.20b and in the new one, we have samba 3.0.21, both compiled like this with no problems: env LD_FLAGS="-L/usr/local/lib" ./configure --with-ldapsam --without-pam --with-quotas --with-ldap --with-included-popt --with-acl-support --with-libsmbclient We share user's

Hi guys I got the errors like this while compiling cluster glue: ./.libs/libplumb.so: undefined reference to `uuid_parse' ./.libs/libplumb.so: undefined reference to `uuid_generate' ./.libs/libplumb.so: undefined reference to `uuid_copy' ./.libs/libplumb.so: undefined reference to `uuid_is_null' ./.libs/libplumb.so: undefined reference to `uuid_unparse'