similar to: lmer error:flist must be a non-empty list

Hi! I am new to looping and R in general; and I have sent waaaay to much time on this one problem and am about a hair away from doing it manually for the next two days. So, there is a package that while calculating the statistic creates lists (that look like matrices) in the background. Each item (there are 10 items) has one of these ‘matrix looking list’ that I need to extract data from. The

Hi, I was wondering if I might be able to ask some advice about doing residual plots for the lmer function in the lme4 package. Our group's aim is to find if the expression staining of a particular gene in a sample (or "core") is related to the pathology of the core. To do this, we used the lmer function to perform a logistic mixed model below. I apologise in advance

Hi the list, I am writing a package in S4 and I do not manage to understand a bug. The "R CMD check" and the "R CMD build" both work. Here is links to the package (not on CRAN yet for the raison that I explain bellow): http://christophe.genolini.free.fr/aTelecharger/kml_0.5.zip http://christophe.genolini.free.fr/aTelecharger/kml_0.5.tar.gz Then I install the package and I

Hello all, I'm a novice R programmer and I don't have a clue as to how to approach this. I have tried many different approaches only to fail and I can't seem to wrap my head around it. So I turn to the experts. I have a text file with patient data that has incorrect dates of service. I need to update the dates of service in the text file with data that's in a dataframe.

Hi. I was wondering if anyone might have some suggestions about how I can overcome a problem of "iteration limit reached without convergence" when fitting a mixed effects model. In this study: Outcome is a measure of heart action Age is continuous (in weeks) Gender is Male or Female (0 or 1) Genotype is Wild type or knockout (0 or 1) Animal is the Animal ID as a factor

Windows 10 64-bit, R-Studio, R version 3.4.3 Several questions relating to groupedData: (1) I am trying to create a groupedData object that can be used to run an analysis that I have been able to urn using lmer. When I include the interaction terms in the groupedData opbject I get an error message stating that + is not meaningful for factors. How do I include factors in my model? See code and

You might get someone on this last willing to invent something from scratch, but really this mailing list works best if you give very specific information, such as a verbatim copy of several records worth of your data file including all the stuff you want to skip over. Usually if someone is planning on inventing an example from scratch they make a blog post which you could find via search engine.

This message is for those familiar with the survey package. I need to fit a weighted Cox model to accommodate the sampling weights as I have a case-control study with controls sampled at random from a database in a ratio 2:1 to cases (whom were all sampled). I want to make sure I am using the right svydesign syntax to specify this sampling design. Can anyone please check if the statement below is

I think we need a bit more info on the data layout and what decision rule you are using to update the Date of Service. Are you just updating a record to provide the most recent DoS or are you correcting errors? Have a look at http://stackoverflow.com/questions/5963269/how-to-make-a-great-r-reproducible-example or Reproducibility ? Advanced R.for some susggestions on how to form a good question

Hi, I have a fairly simple repeated measures-type data set I've been attempting to analyze using the lme function in the nlme package. Repeated searches here and other places lead me to believe I have specified my model correctly. However, I am having trouble with post-hoc tests. From what I gather, other people are successfully using the glht function from the multcomp package to

Dear John You are only allowed to have the primary covariate on the left hand side of the vertical bar. Other covariates go in inner or outer. Michael On 22/03/2018 12:59, Sorkin, John wrote: > Windows 10 64-bit, R-Studio, R version 3.4.3 > > > Several questions relating to groupedData: > > (1) I am trying to create a groupedData object that can be used to run an analysis

Hello, I'm new to R but wan't to use it to compute the statistics of my medical study. The study includes several parameters for a number of patients. Each parameter was assessed by a number of readers, once with a special condition, once without. Now I have a data.frame with colums like: PatientID, ReaderID, SpecialCond(yes/no), Parameter1, Parameter2..... the rows are not sorted, and

Short: get rid of the loops I use and optimize runtime Dear all, I want to calculate for each row the amount of the month ago. I use a matrix with 2100 rows and 22 colums (which is still a very small matrix. nrows of other matrixes can easily be more then 100000) Table before Year month quarter yearmonth Service ... Amount 2009 9 Q3 092009 A ...

hi, folks: i need to transpose the following data: gene tissue patient1 patient2 patient3..... --------------------------------------------- gene1 breast 10 100 1 gene2 breast 20 200 4 gene3 breast 30 50 5 gene4 breast 40 400 9 ................................ to the

hi, everyone: i have a question on the reshape function. i have the following dataset : gene tissue patient1 patient2 patient3............. _________________________________________________ gene1 breast 10 20 50 gene2 breast 20 40 60 gene3 breast 100 200 300 which i hope to convert to the following format: gene patientID

I am trying to create multiple dataset by group like the following using either a loop or vectorization: vocallGp1<-subset(vocallsub, Group==1) vocallGp2<-subset(vocallsub, Group==2) vocallGp3<-subset(vocallsub, Group==3) vocallGp4<-subset(vocallsub, Group==4) vocallGp5<-subset(vocallsub, Group==5) When I create the loop I get the following error:

*I would like to plot some semi-periodic signals as a function of the phase expressed as a value in [0,2PI]* *The problem is that the phase data is reported as the residual of the division by 2PI.* *For instance if the phase is 10.359 rd then:* *15.359 / 6.283185 = 2*6.283185 + 2.79263* *then only the residual 2.79263 is stored. * *In order to plot a number of consecutive cycles I have to add

HI All , I am running a FC6 box with two internet links with load balance . Every thing is working fine expect the MSN connection that failed and reconnect every time and SSL connections . I would link to know if with the nona howto I could fix that . I have been tried with no success to redirect that connection only to one link but its look like do not work . Here my configuration :

am a NEW user to flac.installed flac on eac.tried to rip a cd using eac with flac as external compression.tried the 'wav' icontried the 'mp3' iconboth options saves the file as 'wav'thought eac will rip the cd in the 'flac' file format.is this a 2-step procedure?wherein eac to 'wav' and re-ripped on flac frontend?or is there a ripper with flac in it that

I'm getting the following errors in my error logs: ERROR! vuid 100 did not map to a valid vuser struct! At the time this error was being created I was trying to add a domain user as a local admin. I was trying to get the browse list of domain users up, but being denied. Cheers Jeff -- Jeff Gardiner [ gardiner@nospam.imaging.robarts.ca ] System Administrator - Imaging Research