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Sources for versions of R as far back as 0.65, I believe, are available on CRAN. You can try to compile from source. Andy > From: Qun Shi > > Hi, > > I'm trying to use the version of dchip combined with R to > analyze my data. > I need R version 1.6 which fits for dchip as dchip manual said. So I > would appreciate a lot if someone could tell me where I could

I and my students have been having an odd problem with this release, which is that packages are disappearing. After installation the package is found with the library command, but later in the same session or in a later session, the library command returns a not found error. Then later it is back. Happening on both Windows and OS X, mostly but not entirely with Bioconductor packages. David

..many thanks, no it works until he didn't find hhc.exe (..but the path to HTMLHelpWorkshop should be correct !?) and break down, ok i just check all path settings and find a solution for my self ! But here another problem: ...modify without the MkRules in my current binary R.1.6.1\src\gnuwin32 C:\DataMining\rw1061\library>Rcmd INSTALL Oop make: Entering directory

On Mon, Mar 25, 2013 at 5:04 PM, Qun Fa <testforqunfa at gmail.com> wrote: > Thank you Alexey. I will try this out this week. Any idea on supporting > this for Mac? > > My raw idea is to add this to compiler-rt/lib/profile/CMakeLists.txt > > if(APPLE) > foreach(arch ${PROFILE_SUPPORTED_ARCH}) > add_compiler_rt_static_runtime(clang_rt.profile-${arch} ${arch}

Hi! On Fri, Mar 15, 2013 at 10:51 PM, Qun Fa <testforqunfa at gmail.com> wrote: > Thank you Alexey. > > I have tried to use Makefile. This will generate the correct symbols that > I need. > > Any idea on the schedule of adding CMake support to compiler-rt? > Starting from r177382 CMake on Linux should build the same profile compiler-rt library as Makefiles. >

Thank you Alexey. I will try this out this week. Any idea on supporting this for Mac? My raw idea is to add this to compiler-rt/lib/profile/CMakeLists.txt if(APPLE) foreach(arch ${PROFILE_SUPPORTED_ARCH}) add_compiler_rt_static_runtime(clang_rt.profile-${arch} ${arch} SOURCES ${PROFILE_SOURCES} CFLAGS --sysroot=${COMPILER_RT_DARWIN_SDK_SYSROOT}) endforeach() endif() Do you

Thank you Alexey. I have tried to use Makefile. This will generate the correct symbols that I need. Any idea on the schedule of adding CMake support to compiler-rt? Sincerely, Qun On Fri, Mar 15, 2013 at 1:51 AM, Alexey Samsonov <samsonov at google.com>wrote: > > On Fri, Mar 15, 2013 at 1:36 AM, Qun Fa <testforqunfa at gmail.com> wrote: > >> Hi All, >>

On Fri, Mar 15, 2013 at 1:36 AM, Qun Fa <testforqunfa at gmail.com> wrote: > Hi All, > > I think Nick's suggestion is correct, my code was linked against > libprofile_rt.a, which had gcda profiling code before, but was removed > https://github.com/llvm-mirror/llvm/commit/218042a02305a3cc38d968a97ff9ecf4b4abe6ff > > So, I couldn't find the correct symbols from

Hi all I am trying to package a library in R 1.6.1 (Windoze XP). I have read the document "Writing R extensions" and think I have done things correctly (though apparently not). I have searched the mail archives for help to no avail. I also posted a few days ago and thanks to Peter Dalgaard I have managed to focus my search for errors. I am trying to create a library in R. I run the

R-Help readers: I have downloaded rw1061.exe several times from CRAN and one of the mirrors, and when installing I get two error messages about inability to copy corrupted files. The two files are: c:\Program Files\R\rw1061\library\nlme\R\nlme c:\Program Files\R\rw1061\library\base\html\plotdefault.html I can probably just reinstall nlme from CRAN, but I'm not sure what to do about the

Hi All, I think Nick's suggestion is correct, my code was linked against libprofile_rt.a, which had gcda profiling code before, but was removed https://github.com/llvm-mirror/llvm/commit/218042a02305a3cc38d968a97ff9ecf4b4abe6ff So, I couldn't find the correct symbols from libprofile_rt.a any more. Now my assumption is I need to use the correct library that is provided by compiler-rt.

Thanks for your reply. May I know which is the recommended library that should be linked against? I am currently linking libprofile_rt.a. And I have noticed the differences that, if we do `nm libprofile_rt.a | grep llvm` with my old copy of the llvm/clang installation, I can see 00000000000005e0 T _llvm_gcda_emit_arcs 0000000000000b48 S _llvm_gcda_emit_arcs.eh 0000000000000430 T

Hi, I am trying to test my project and get the code coverage with a version of clang compiler that was built from the latest llvm/clang codebase. It worked for a while. But today, after I updated my local checkout, and re-build llvm, clang and compiler-rt, when I test my project again, I got the errors with undefined reference to 'llvm_gcda_start_file', 'llvm_gcda_emit_arcs',

Qun Fa wrote: > Hi, > I am trying to test my project and get the code coverage with a version > of clang compiler that was built from the latest llvm/clang codebase. > > It worked for a while. But today, after I updated my local checkout, and > re-build llvm, clang and compiler-rt, when I test my project again, I > got the errors with undefined reference to

Happy new year to all; A few days ago, I posted similar problem. At that time, I found out that our R program had been 32-bit compiled, not 64-bit compiled. So the R program has been re-installed in 64-bit and run the same job, reading in 150 Affymetrix U133A v2 CEL files and perform dChip processing. However, the memory problem happened again. Since the amount of physical memory is 64GB, I think

I have to work with really huge matrices (about 1000*1000 or more). And I want to save those matrices in some file on my computer. I tried to do so by using the command write.tabe(SMatrix,file="C:/Programme/rw1061/SMatrix.txt",sep=" ",quote=FALSE,row.names=FALSE,col.names=FALSE) SMatrix is the matrix I want as a file. Unfortunately this does not work. Error message: Error:

I have made many different attempts to run a R program in Batch mode. I run a DOS command like: C:\Progra~1\R\rw1061\bin\rterm.exe -q --no-restore --no-save myprogram.R out.txt What happens: 1. DOS Shell starts up well 2. R starts 3. I get the messages: "ARGUMENT 'myprogram.R' __ignored__" "ARGUMENT 'out.txt' __ignored__" 4. R Shell is ready to

Hi.... I have a question about how to increase my memory size, could someone answer it for me?? I am using Bioconductor in R to calculate gene expression values with mas5, dchip, and mas4. I have only 18 samples, all from Affymetrix U133A Plus 2 arrays, which has ~54,000 genes. My machine equipments are: CPU P4 3.0GHz, and 1GM RAM. Somehow when I was running mas5 in R, it always showed the error

I use dChip and Affymetrix gtype to apply some genotyping functions to some microarrays data. Do you know if similar R functions exist? Thank you! Francesco ----------------------------------------------------------- Francesco Falciano, Ph.D. CINECA (High Performance Systems) via Magnanelli, 6/3 40033 Casalecchio di Reno (BO)-ITALY tel: +39-051-6171724 fax: +39-051-6132198 e-mail:

I cannot seem to get compiled help working with XP in neither 1.6 or 1.61. The ReadMe.rw1061 specifies: (ii) Compiled HTML files. Set this as the default by options(chmhelp=TRUE) or for individual help items by help(topic, chmhelp=TRUE). Full text search is available from the Search tab. According to Microsoft, to make use of this you will need to have IE3 or later installed and a recent version