similar to: Why I can't retrieve GO identifier correctly?

Hi, I used GOstats to perform enrichment test on a set of genes (20). There are 7 GO terms with pvalue less than cuttoff and therefore shown in the result table. How can I get the information that which gene in the input gene set belong to which GO term of these enriched GO terms? Thanks for any comments. best, Tim [[alternative HTML version deleted]]

Hi, is somebody out there who has successfullly built R-065 on SuSE-6.2 Linux ? This is for short, If nobody has I?ll describe the problem in depth later. Ralph -- Ralph Leonhardt, 8-) Seminar fuer Internationale Wirtschaftsbeziehungen Tel: 2180-2201 email: ralphl at lrz.uni-muenchen.de -.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.- r-help mailing list -- Read

Hi, I work with bio-conductor, but this is probably a basic R question. I want to emulate the GOBPOFFSPRING$"GO:0008150" command: > allBP <- GOBPOFFSPRING$"GO:0008150" > class(allBP) [1] "character" > length(allBP) [1] 16066 > I want to create a function so that I can execute the command by passing as a parameter the portion in quotes in the above

Hi again, I have been playing around with the order of loading packages, and as far as I can tell, there's nothing specific with affycoretools that's causing my Rgui to crash (i.e., shuts down and the Microsoft 'please send error report' box pops up). Instead, it has something to do with the order & type of packages that are loaded that add items to the menu bar by

I am running R 2.0.0, GOstats 1.1.1 and GO 1.7.0, and when I use the function GOHyperG, I have the following error: w1<-as.list(hgu95av2LOCUSID) w2<-unique(unlist(w1)) set.seed(123) myLL<-sample(w2,100) xx <- GOHyperG(myLL) Error in mget(x, env = GOTERM, ifnotfound = NA) : recursive default argument reference In fact first I tried this function with my locusId ' list (with

Hi All, I have a Linux RedHat 7.0 box running web server and Samba server 2.2.0. I have setup accounts for users. I wish to use the password sync feature. I uncommented the lines; unix password sync = yes passwd program = /usr/bin/passwd %u passwd chat = *New*UNIX*password* %n\n *ReType*new*UNIX*password*%n\n *passwd:*all*authentication*tokens*updated*successfullly* But this doesn't seem to

I have developed a problem with the postscript output of plot on Windows. My code still works properly with R 2.3 but, with R 2.4, the white text on red background does not show up. It does, however, show up when output is sent to the screen. Below is my code and sessionInfo. R version 2.4.0 Under development (unstable) (2006-08-29 r39012) i386-pc-mingw32 locale: LC_COLLATE=English_United

I have run into a problem loading a just saved R object using R-devel. I have been saving and loading this particular type of R object for a long while and never ran into this problem. I save, then immediately reload (to test save) and get "ReadItem: unnknown type 65". This error is reproducible after logout from server and restart of emacs and R. Below is my output and

I have run into a problem loading a just saved R object using R-devel. I have been saving and loading this particular type of R object for a long while and never ran into this problem. I save, then immediately reload (to test save) and get "ReadItem: unnknown type 65". This error is reproducible after logout from server and restart of emacs and R. Below is my output and

I can enabling 32bit solaris guest on top of solaris dom0, but I don''t know how to enable 64bit solaris guest on top of solaris dom0. what configuration I need to modify?

Following is a function that I wrote (It is working well). It's a simple one, nothing complicated. The only question that I have is a qutation mark issue, I guess. ############################################# funcname <- function(trait.file){ #line1 setwd('/root/subroot') # line 2 load('imge.RData')

Can you also post information such as: Type of phone (model Number would be idela) How is it conencted, SIP, ZAP, IAX, Channel Bank. Corresponding config files would also help. Help us help you. >>-----Original Message----- >>From: asterisk-users-bounces@lists.digium.com >>[mailto:asterisk-users-bounces@lists.digium.com] On Behalf Of >>Paul A Brown >>Sent:

Dear R users, First of all, thanks for the incredibly fast answers and help of Rolf, Marc and Robert. Yes, I noticed that it was a lot of permutacions, but my intention was to make this process automatic and take only 5.000 - 10.000 permutations. Therefore, I wanted only to take that "interesting permutations" with "some information" [inter-block permutations]. The

Dear All, I need to fetch GO ontologies for Homo sapiens with their mappings to corresponding Uniprot identifiers. I would be using this information to compare result from a clustering algorithm with existing protein complexes. This would be a test to check how the clustering algorithm accurately captures GO terms with respect to the known protein complexes. Can anyone suggest a simple workflow

Greetings - I'm finally finished review, here's what I heard: ============ from Tobias Verbeke: anthony.rossini@novartis.com wrote: > Greetings! > > After a quick look at current programming tools, especially with regards > to unit-testing frameworks, I've started looking at both "butler" and > "RUnit". I would be grateful to receieve real

Hallo! I am using on a system based on Debian GNU/Linux Etch on AMD64 platform Linux and Solaris running in a HVM domU but they both seem to be 32bit environments. I know so because 64bit Linux didnt boot and said something about am I trying to run it in 32 bit environment; and because i had to install 32bit Oracle because 64bit Oracle said it expected BIT_SIZE=64 and got BIT_SIZE=32. And also,

On 19 October 2010 07:57, Jin Gu Kang <jaykang10 at imrc.kist.re.kr> wrote: > Frist, I have been implementing common type for struct type on bitcode > at compilation time using llvm-gcc and then changing common type to target > specific types at code generation time using llc (reconstruct StructLayout). Hi Jin, Apart from bitfields and unions, the struct type is pretty much target

-----Original Message----- From: Robert Gentleman [mailto:rgentlem@fhcrc.org] Sent: Wed 10/12/2008 18:47 To: Legaie, Roxane Subject: Re: Kegg.db with GOstats Hi Roxanne, Can you redirect your question to the mailing list. And, you can find the answer in the mailing list archives... best wishes Robert Legaie, Roxane wrote: > Dear Robert Gentleman, > I am currently working on

Dear all, I'm attempting to insert a legend into a line graph. I've sorted out the positioning, but I'm unable to display the sample line and associated colour to go within the legend box. Instead, under the variable names, the numbers 1, 2, 2, 3 are displayed in a column (with '2' repeated twice). This is the code I'm using: legend(80,1150, c("Simulation",

Hi LLVM members, I have been working to make target independent memory layout for struct type(Aggregate type) in my team. I think that struct type has different memory layouts according to each target system in current LLVM. To implement target dependent concept for struct type, Frist, I have been implementing common type for struct type on bitcode at compilation time using llvm-gcc and then