similar to: Partial Least Squares

Dear R-helpers, I am looking, quite unsuccesfully, for a number of functions/packages. Firstly, I am interested in a package for partial least squares. I have found that there seemed to exist a package called pls, but which seems not to run any more with modern versions of R. I have not been able to find certain "chemometrics package" I found some people discussing about in this

Hi everybody! Is there any package or functions to make Partial Least Squares analysis with R? Thanks a lot Luis -------------------------------------------- sapo.pt/kitadsl -.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.- r-help mailing list -- Read http://www.ci.tuwien.ac.at/~hornik/R/R-FAQ.html Send "info", "help", or

Hi, I need to convert numbers to characters in order to index an array when I encountered the number 100000 which turned into "1e+05". Does anyone know how to get around this problem? Lana Schaffer Biostatistics/Informatics The Scripps Research Institute DNA Array Core Facility La Jolla, CA 92037 (858) 784-2263 (858) 784-2994 schaffer at scripps.edu

Hi, Can someone suggest an efficient way to substitute a vector/matrix which contains 1's and 0's to P's and A's (resp.)? Thanks, Lana

Hi, I am trying to compile the R-dev version on a unix Suse machine and got errors. Would someone be able to help me determine what to do to fix these errors: make[1]: Entering directory `/lustre/people/schaffer/R-devel/m4' make[1]: Nothing to be done for `R'. make[1]: Leaving directory `/lustre/people/schaffer/R-devel/m4' make[1]: Entering directory

Hi, I am using this subset statement and it works outside a function. LIS[[i]]<- lapply(LI, subset, select=cov[[i]]) However, wrapped inside a function this statement produces the same values for every LIS[[1]] which is only the first subset of LI. Does anyone know why is not working correctly inside a function? ff = factor(covariate) nLev <- nlevels(ff) cov <-

I am not able to find information about doing line plots with error bars in the R- help information. Would someone like to tell me if this can be done in R and either get me started or lead me to information about how to do the error bars? Thanks, Lana

Subject: Eliminate repeated components from a vector X-Mailer: VM 7.00 under 21.4 (patch 6) "Common Lisp" XEmacs Lucid Reply-To: fjmolina at lbl.gov FCC: /home/f/.xemacs/mail/sent Does anyone know how I can eliminate repeated elements from a vector?

How can plots (histograms) be implemented with the command line interface to R? Lana Schaffer

Hi all, I would like to do some QSAR analysis (quantitative structure activity relationship). I need to use some Partial Least Squares (PLS) regression, but I have not seen this option on the R-project. Is it possible to do this kind of regression on R? thank you in advance best regards, olivier [[alternate HTML version deleted]]

Hello i need some precision about nipals in the chemometrics package in R . When i use nipals in chemometrics i obtain T and P matrix. I really don't understand what to do with these two matrix to obtain the scores for every the component (like in spss fo example) Comp1 Comp2 Comp3 quest1 0,8434 0,54333 0,3466 quest2 0,665 0,7655 0,433 Thank you very

Dear list members; The code given below corresponds to the PCA-NIPALS (principal component analysis) algorithm adapted from the nipals function in the package chemometrics. The reason for using NIPALS instead of SVD is the ability of this algorithm to handle missing values, but that's a different story. I've been trying to find a way to improve (if possible) the efficiency of the code,

Dear all: I am comparing the PLS outputs of R and SAS for the following data set: Y x1 x2 x3 3 6 2 2 3 1 5 5 4 7 4 1 5 6 5 6 2 4 3 2 8 5 0 9 where Y is the dependent variable and x1, x2, x3 are the independent variables. I found several PLS algorithms in R (NIPALS,SIMPLS,KERNEL PLS). SAS has SIMPLS and NIPALS. The following are the NIPALS calculations of

Hi all, I've been trying to figure out how to superimpose a histogram on a biplot that shows the relative contribution of each axis. I have been using the NIPALS function (http://biomserv.univ-lyon1.fr/~dray/ files/softwares/nipals.R) to run principal component analyses. Here is a toy example. source("http://biomserv.univ-lyon1.fr/~dray/files/softwares/nipals.R")

Hello, I am trying to understand how to utilize the "mvr" function in the pls Package of R. I am utilizing the R "pls Package" document dated 18 May 2005 as guidance. My data set consists of a 12 x 12 data frame created from reading in a table of values. I have read the data in via the command: volumes <- read.table("THA_vol.txt", header = TRUE) and then

Hello! I need help to use the package pls.pcr in R. I installed R in an IRIX 6.5, using the version of R 0.64.1 from sgifreeware(I didn't get to install the newest version using make). I need to use the package pls.pcr and when I give the command: # R R : Copyright 1999, The R Development Core Team Version 0.64.1 (May 8, 1999) R is free software and comes with ABSOLUTELY NO

I intend to port an R project from Linux to Windows. It involves C code that is loaded via dyn.load(). I could manage to produce a 'dll' File using cygwin which seems to be o.k. Now, using dyn.load("pcr.dll") i get: Error in dyn.load(x, as.logical(local), as.logical(now)) : unable to load shared library "c:/cygwin/home/pingu/rt-pcr/pcr.dll": LoadLibrary

I found an interesting page today that I was trying to script against. The server returns a 404 with content and the page just works normally in firefox despite the 404. Mechanize raises an exception on it though. I''m working on a test case now.

Hi, Currently I have a dataset of 2400*408. And I would like to apply PCR method to study the any correlation between the tests. My current data is in data.frame and I have formed horizontal(1-407) to be the exact data, and (408) to be my results data(Yes and No) I have also binarized these Yes and No to 1 and -1s. However, when I refer to PCR manual on R, the example of yarn.pcr <-

Is anyone using Gluster with the Rocks cluster system? If so, do you know if there is a Roll for Gluster? Or, do you have any advice about things to do and things to avoid doing? We're considering using Gluster with Infiniband on our cluster and trying to learn whether other people have done this so we can perhaps learn from their experience. Thanks. .. Lana (lana.deere at gmail.com)