similar to: "make" error for R-1.9.1

Hi [MacOsX 10.4.6; R-2.2.1] I have a bundle that comprises three packages. I want to run R CMD check on each one individually, as it takes a long time to run on all three. I am having problems. The bundle as a whole passes R CMD check, but fails when I cd to the bundle directory and run R CMD check on a package directory. The whole bundle passes: octopus:~/scratch% R CMD check

Hi, This is (presumably?) a bug in R 1.7.0 under Windows. I have not tested it on other systems. Attachment of packages is case sensitive but not library(), resulting in multiple loadings of the same package if the library name is spelled differently. The following example loads the `tools' package, once as `tools' and once as `Tools'. This behavior is the same with all packages and

Hi everyone. look at this: x <- 1:4 x[c(1,2,1)] <- (1:3) print(x[1]) I get 3, but isn't NA more appropriate? [1 would be as sensible]. FWIW, the equivalent Fortran 95 statement is flagged as an error. R-intro, section 2.7, says that in such cases the assignment is carried out "in order" which might support getting 3. To my way of thinking, the concept of "in

On Mon, Nov 24, 2014 at 12:12 PM, John R. Dennison <jrd at gerdesas.com> wrote: > On Mon, Nov 24, 2014 at 12:04:30PM -0600, Les Mikesell wrote: >> >> Umm, yeah. Encrypted protocols would never be compromised.... > > Which do you think is more likely? Someone sniffing a cleartext > credential set on the wire or someone subverting an alleged "secure" >

On Jan 6, 2015, at 6:49 PM, John R. Dennison <jrd at gerdesas.com> wrote: > On Tue, Jan 06, 2015 at 06:37:42PM -0700, Warren Young wrote: > > Noise removed. > > Quick question, if I may? What does this have to do with CentOS? Some people are annoyed that CentOS keeps changing on them, and keep going to greater and greater lengths to try and argue that CentOS should not

Hi. I have been pondering array indexing via matrices. > a <- array(1:27,rep(3,3)) > index <- matrix(c(1,1,1,1,2,3),2,3,byrow=TRUE) > a[index] [1] 1 22 as expected and documented. But what was the thinking behind the decision to access the array by rows rather than columns? The 'index' matrix is ordered as [1,1,1,2,1,3] and so the extraction is a[index[c(1,3,5)]]

Dear R community A few weeks ago, I uploaded a small text file called R-and-octave.txt to the contributed docs section of CRAN. This file details octave/matlab commands and their (near) equivalents in R (Matlab is a widely-used high-level graphics/mathematics tool and octave a free clone). Someone has just pointed out to me that I never announced its existence to anyone, hence this email (I

Hi I am having difficulty defining an S4 method for head() and tail(). I can't quite provide minimal self-contained code because the problem appears to require the whole corpus of my package; and there also appears to be a difference between sourcing the lines directly, and having them installed in a package. The lines in question (I think) are: setClass("mdm",

Dear list, I was trying to create a VarClass for nlme to work with Fay-Herriot (FH) models. The idea was to create a modification of VarComb that instead of multiplying the variance functions made their sum (I called it varSum). After some fails etc... I found that the I was not getting the expected results because I needed to make sigma fixed. Trying to find how to make sigma fixed I run into

Hello. R-devel, r61697. I am having difficulty interpreting section 1.4 "Writing package vignettes" of the R-exts manual. Specifically, I want to use system.file() in some of my packages to locate a bib file, uncertainty.bib, which is part of the emulator package. I only want to maintain a single .bib file. R-exts says: "All other files needed to re-make the vignette PDFs (such

Professor Ripley thanks for this. Very much appreciated. The original subject line reflected my late-night conviction that the answer might involve passing a strange list to do.call(). Anyway, package magic is broken (only in R-devel, I might add) because I have a function called "%eq%". R-2.0.0 CMD check is stopping (I think) because it interprets the "%" as a

Hi I have a package that I'm testing. It seems to install fine and it works, as far as I can tell. For example, I can install the package, and use it, and source the test suite with no errors. My problem is with R CMD check. It passes on R-2.2-0: Robin-Hankins-Computer:~/scratch% R CMD check ./partitions_1.1-0.tar.gz * checking for working latex ... OK [snip] make[1]: Leaving directory

Hi R version 2.4.0 alpha (2006-09-06 r39158) MacOSX 10.4.7 There was a thread some time ago as to whether the structure created by package.skeleton() would pass R CMD check. I have an example where package.skeleton() gives an R file that gives an error when sourced. If I type setClass("brob", representation = representation

Hi. I am having difficulty following section 1.6.6 of the R-extensions manual. I am trying to update the Brobdingnag package to include a NAMESPACE file (the untb package requires the Brobdingnag package). Without the NAMESPACE file, the package passes R CMD check cleanly. However, if I include a NAMESPACE file, even an empty one, R CMD check gives the following error in 00install.out:

On Wed, Jan 14, 2015 at 3:26 PM, John R. Dennison <jrd at gerdesas.com> wrote: > On Wed, Jan 14, 2015 at 03:09:01PM -0800, PatrickD Garvey wrote: >> >> Proposal: >> The Third Party Repositories section should not list any other repositories, >> but should only note there are difficulties in making several independent >> repositories safely usable and give a

On Sat, 22 Nov 2014 17:10:40 -0600 "John R. Dennison" <jrd at gerdesas.com> wrote: > On Sat, Nov 22, 2014 at 11:41:17PM +0100, Gabriele Pohl wrote: > > > > I don't like to spend time in creating ugly workarounds.. > > and therefore would highly appreciate if the CentOS-Developers > > will add the data to the yum repositories. > > Then I can

Hi [R-2.10.0; suse linux] I am having difficulty creating S4 objects in the data directory of a package. I want to create a bunch of simple S4 objects for use in the examples section of the Rd files. It says in R-exts that: " R code should be ?self-sufficient? and not make use of extra functionality provided by the package, so that the data file can also be used without having to load

Sorry if this is obvious, but my S skills aren't great and I haven't been able to find it documented anywhere. I want to write a new function for use with lme objects; the function will simply calculate an ICC (aka "rho") for each level of a mixed-effects model. What I need for this is pretty simple: (c(var1..varn, residual)) / sum(c(var1..varn, residual)) where var1..varn

Hello R users, When trying to fit a nonlinear mixed model to a respiration time series, I get the following error message: Error in recalc.varFunc(object[[i]], conLin) : dims [product 30] do not match the length of object [34] In addition: Warning message: In conLin$Xy * varWeights(object) : longer object length is not a multiple of shorter object length Below is an example that generates

I am trying to fit a B-spline regression model with a corStruct using gls. I am using bs() and specifying the knots myself. If I make the knots data-dependent, this works but has undesirable side-effects. I prefer to reference an auxilliary variable "knots" in my model formula. It should not be part of the data frame, as it is a vector of a different length. How can this be done? The