similar to: Solve for "Please set TMPDIR to a valid temporary directory"

Dear R help, I'm pretty new to R and would be grateful for help. I have 11 data.frames, each with 3 columns of data. Each has the same row.names, however these are not sorted. Please tell me the best way to sort these (by row.names) and secondly the best way to extract data columns from these to form a merged table. Thanks a million Aedin

Dear R-Help I am running apply on a data.frame containing factors and numeric columns. It appears to convert are columns into as.character? Does it convert data.frame into matrix? Is this expected? I wish it to recognise numerical columns and round numbers. Can I use another function instead of apply, or should I use a for loop in the case? > summary(xmat) A B

Hi, I'm developing a package whose API is only meant to be used in other packages via imports or pkg::foo(). There should be no need to attach this package so that its API appears on the search() path. As a maintainer, I want to avoid having it appear in search() conflicts by mistake. This means that, for instance, other packages should declare this package under 'Imports' or

Hello R-users: I'm experiencing difficulty in building a package in R 1.4.1 under Windows 2000. When I run Rcmd I get this: F:\r\library>f:\r\bin\rcmd check ringsim Please set TMPDIR to a valid temporary directory F:\r\library>f:\r\bin\rcmd build ringsim Please set TMPDIR to a valid temporary directory This problem was discussed over a year ago - the problem was attributed to a Perl

First I tried 'setenv R_SHELL /usr/local/bin/bash', as bash is the weapon of choice for the faculty wishing to use R, then ran ./configure as before. The ./configure output line using as R_SHELL for scripts ... /usr/local/bin/bash would seem to indicate that the R_SHELL environment variable was recognized and acknowledged. However, I got the same build error: gnumake[2]: Entering

Hi all, I'm trying to build from source on Linux and getting the following error when it tries to build the help for 'nlme': <snip> ranef.lme text html latex example reStruct text html latex example /home/sfalcon/sw/R-related/R-1.8.1/bin/INSTALL: line 1: 8133 Segmentation fault ${R_CMD} perl

I use my "custom" TMPDIR variable with virt-sparsify. I just type: export -p TMPDIR=/mnt/vm/tmpdir I do that for a couple reasons: either my /tmp is on a ramdisk or /tmp is on my (ssd) rootfs and i dont want to "full" my / with the temporally files. Thats said, i was thinking to "ask" OR sending a patch for adding a tmpdir OPTION for virt-sparsify like

Add an optional parameter for Python_script.create, to specific the temporary directory to use instead of creating a new one. --- v2v/python_script.ml | 13 ++++++++----- v2v/python_script.mli | 5 ++++- 2 files changed, 12 insertions(+), 6 deletions(-) diff --git a/v2v/python_script.ml b/v2v/python_script.ml index 3159373a1..6bb14ec1f 100644 --- a/v2v/python_script.ml +++

On Thu, Sep 19, 2019 at 02:30:05PM +0200, Pino Toscano wrote: > Make use of the temporary directory of the rhv-upload mode also for the > Python scripts that the mode creates, instead of creating new > directories. > --- > v2v/output_rhv_upload.ml | 10 +++++----- > 1 file changed, 5 insertions(+), 5 deletions(-) > > diff --git a/v2v/output_rhv_upload.ml

Full_Name: Vilmos Prokaj Version: 2.5.1 OS: windows Submission from: (NULL) (81.183.3.216) I'm not sure that this is really a bug, if not I do not understand why should it be in this way. Most of the scripts used to build and install new packages calls the R program with the --slave --vanilla command line options. In the INSTALL script however we can find the following lines

Hi folks, I'm having a spot of bother with tempdir(). If I set the environment variable TMPDIR in my shell prior to invoking R it works as expected: > Sys.getenv("TMPDIR") TMPDIR "/eurotempest/tmp/R" > tempdir() [1] "/eurotempest/tmp/R/Rtmp0xY4XD" However if I don't set it prior to entry, but attempt to set it from within

I have setup R 1.9.1 on my Dell laptop running windows XP. I have installed it to C:\R\rw1091. Rgui runs fine, but Rcmd fails if run with parameters (i.e. install). The windows dialog box cheerfully says "R for Windows front-end has encountered a problem and needs to close. We are sorry for the inconvenience." Running the visual C++ debugger informs me that there is an unhandled

Add a new optional parameter for the Curl ADT, so temporary files can be created in a specified directory (which is supposed to be temporary, and disposed only when the application quits). --- mllib/curl.ml | 10 ++++++---- mllib/curl.mli | 2 +- 2 files changed, 7 insertions(+), 5 deletions(-) diff --git a/mllib/curl.ml b/mllib/curl.ml index 376406e..baa75ec 100644 --- a/mllib/curl.ml +++

Add a new optional parameter for the Curl ADT, so temporary files can be created in a specified directory (which is supposed to be temporary, and disposed only when the application quits). --- mllib/curl.ml | 16 +++++++++++----- mllib/curl.mli | 2 +- 2 files changed, 12 insertions(+), 6 deletions(-) diff --git a/mllib/curl.ml b/mllib/curl.ml index 376406e..7d07125 100644 --- a/mllib/curl.ml

Hello everyone! Temp paths are used in system2() calls without shQuote() because they are assumed not to contain spaces. On Windows, GetShortPathName() is used to try to ensure that. Unfortunately, sometimes GetShortPathName() silently fails to return a 8.3 file path and gives a full path instead (8.3 file names might be disabled on newer Windows 10 installations, or there may be another

I noticed that if I specify the location of TMPDIR in .bashrc as follows on a Linux 64 bit system: export TMPDIR=/store/home/ayee/.tmp I get the following error message when installing R make[3]: Entering directory `/home/ayee/R-patched/src/library/base' building package 'base' make[4]: Entering directory `/home/ayee/R-patched/src/library/base' /bin/sh: line 8:

Hi Henrik, A bit late, but you can take a look at smbache's {import} package [1] in case you didn't know it. I believe it does what you are describing. [1] https://github.com/smbache/import I?aki On Tue, 23 Jun 2020 at 22:21, Henrik Bengtsson <henrik.bengtsson at gmail.com> wrote: > > Hi, > > I'm developing a package whose API is only meant to be used in other

This run was done this AM on my linux box, and older 32 bit Dell optiplex (core 2 duo). The failure message is at the very end. (It's due to be replaced in a couple of weeks.) The sequence of steps was svn up tools/rsync-recommended ./configure make make check-all |& tee zzz Terry T. Result of ./config R is now configured for i686-pc-linux-gnu Source directory: .

My only comment on this series is it's hard to understand what the ?tmpdir parameter actually does without examining the code. It specifically means that the Curl module writes a security- sensitive file to this directory (or the global tmpdir), and if the caller specifies ?tmpdir then it is their responsibility to remove the tmpdir later -- otherwise the file containing passwords etc is left

https://bugzilla.mindrot.org/show_bug.cgi?id=1809 Summary: ssh-agent doesnt respect $TMPDIR Product: Portable OpenSSH Version: 5.6p1 Platform: All OS/Version: All Status: NEW Severity: normal Priority: P2 Component: ssh-agent AssignedTo: unassigned-bugs at mindrot.org ReportedBy: vapier at