similar to: R CMD Sd2Rd

Dear useRs- I am developing a package that uses output from stand-alone unix software programs. I use multiple perl scripts to process the output and make it ready for reading into R. I would like to keep the perl scripts in the designated place for such files, exec/, but I can't find how a user is supposed to be able to use those when using the library. R-exts 1.1.4:

Full_Name: Eric Lunde Version: 2.0.1 OS: Solaris 9 Submission from: (NULL) (129.176.151.21) Hi R Devel, I am assisting one of my fellow R users who is developing a package for both Splus and R. He has been using the Sd2Rd command to convert his sgml help files into Rd help files. We believe we have found a bug. We noticed that if an sgml help file has multiple <s-topic> tags, each of

Using R 1.7.1 in Solaris I'm developing a package for both Splus and R, and I'm trying to use all the same files for R and Splus, both function files and help files. I have two questions. 1) The file made by R CMD check to run .Rd-examples posts examples from files in alphabetical order. Is it okay/recommended/common-practice to set up all the example data in the first two

Re-sending this from 10/7. Please help! I'm really clueless how to fix this: System: Solaris 7, Software: R_1.7.1 for unix > R CMD INSTALL -l /Rdir/library haplo.stats_1.1.0.tar.gz -works like a charm-- no syntax errors, etc But problems are when I'm loading the library within R. > library(haplo.stats, lib.loc="/people/biostat3/sinnwell/Rdir/library") > Error

I'm using R 2.2.0 on Windows. Doing some conversions of help files. Internal comments indicate that the Sd2Rd conversion is "Converted by Sd2Rd version 1.21." I'm converting .d -> .Rd .sgml -> .Rd using Sd2Rd, then checking by using Rdconv to convert .Rd back to .d or .sgml. Here are errors in some of the conversions. The most significant errors are in .Rd to .sgml.

We have R 2.2.1 installed on a Linux cluster that seems to have problems loading either of our shared object libraries for packages. This seems to be happening on both local and global versions of packages that we install. However, we have only noticed this problem in the past 3 months on this R installation, whereas some users had success before then. It could be that something on our system

Dear list, I have some help file for S-Plus 2000 in .d and .sgml format. Is there a way to translate these files to .Rd files to use in an R package? Thanks Fredrik Lundgren

Documentation for S3 functions is apparently written in troff markup with macro tags like .BG .FN .TL .DN .CS ... Inspection of S3 documentation source files gives a pretty clear idea of what these mean, semantically (and Sd2Rd is a perl script which converts this markup into the Rd format, providing further semantic information along the way). My query is: Can anyone point to troff

I am on Solaris 7, using R_1.7.1 developing packages for both Splus and R. We have a working R-package for haplo.score and now converting to haplo.stats. R CMD INSTALL -l /people/biostat3/sinnwell/Rdir/library haplo.stats_1.1.0.tar.gz works like a charm-- as comparable to our working version of haplo.score. But problems are when I'm loading the library within R. Within my package I have

Dear useRs, Please find the new package ibdreg version 0.1.0 on CRAN. The package contains a method for analysis of genetic linkage with covariates by regression methods that use identity by descent (IBD) sharing probabilities for relative pairs. The methods account for correlations of IBD statistics for relative pairs within the same pedigree. The reference is: Schaid DJ, Sinnwell JP,

Dear useRs, Please find the new package ibdreg version 0.1.0 on CRAN. The package contains a method for analysis of genetic linkage with covariates by regression methods that use identity by descent (IBD) sharing probabilities for relative pairs. The methods account for correlations of IBD statistics for relative pairs within the same pedigree. The reference is: Schaid DJ, Sinnwell JP,

Oops, Just found a typo. Here's the updated version. -k *********************************************************************** #!/usr/bin/perl $VERSION = "0.1-5"; $\ = "\n"; $parenLevel = 0; $inVerbatim = 0; $inSeeAlso = 0; $doprint = 1; $needArg = 1; $needVal = 0; $output = ""; use Getopt::Long; GetOptions (("x")) || &usage(); while

I am using R 1.2.3 on Linux Mandrake 7.2. I have a ton of S Nroff help files that end with source code typified by the following: Last S statement in an example, e.g. X <- y ..KW models ..KW regression ..WR When using R RMD Sd2Rd to create the .Rd file I get X <- y \keyword{models} \keyword{regression} } The } matches a { in \examples{ at the beginning of the example code (started in

Thanks to Martin, there is another update of the S doc -> R doc script. It now correctly maps .SE into SECTION. -k *********************************************************************** #!/usr/bin/perl -w $VERSION = "0.1-3"; $\ = "\n"; $parenLevel = 0; $inVerbatim = 0; $inSeeAlso = 0; $doprint = 1; $needArg = 1; $needVal = 0; $output = ""; $opt_x = 0; use

Another update of the S doc -> R doc conversion script is attached below. Relative to the previously released version, there are two changes. * Quoting of parentheses does not happen in verbatim-like sections * More importantly, the way words in the .SA (SEEALSO) section are treated is now controlled by an optional argument, `-x'. Without this option, only words enclosed in single

haplo.stats, version 1.5.2, is now available on CRAN. Below I provide the description and link to our software page where you can also find the updated user manual. The most notable updates for this version were to make the haplo.glm fitted object work more like the glm object; other changes are listed in the NEWS file entries pasted below. DESCRIPTION: haplo.stats: Statistical Analysis of

haplo.stats, version 1.5.2, is now available on CRAN. Below I provide the description and link to our software page where you can also find the updated user manual. The most notable updates for this version were to make the haplo.glm fitted object work more like the glm object; other changes are listed in the NEWS file entries pasted below. DESCRIPTION: haplo.stats: Statistical Analysis of

Attached is another update. New features/bugs: *) now also attempts to get non-quoted object names within SEEALSO sections to have a LANG(LINK(...)) around them *) parentheses are now ALWAYS quoted, to prevent the rdoc2... scripts from choking on unbalanced ones (e.g., "x in the range (0, 1]") *) blank lines are mapped into PARA so that e.g. reference sections come out better *)

I'm trying: R CMD Rdconv file.Rd --type=Ssgm If file.Rd contains \code{x} then this is currently translated as <s-expression>x</s-expression> I suggest instead translating to <code>x</code> (provided that R CMD Sd2Rd is changed to support the <code> tag; I just submitted that bug separately). Note that this is an enhancement, not a bug. This change would

Dear useRs: We would like to introduce the "pedgene" package, version 1.2, available now on CRAN, with a brief manual available as a vignette: http://cran.r-project.org/web/packages/pedgene/index.html The pedgene package performs gene-level kernel and burden association tests with disease status and continuous response for pedigree data, as described in our recent paper: Schaid, D.