similar to: About reading data into R

Dear Rui, >From my understanding of time-dependent covariates (not an expert but have been working on a similar problem), it would appear that the coding of the status column is not correct. Unless you have observed an event at each interval you should only have status=1 for the last interval. In your example I see 3 in total. Also, I think that if "end" is proportional to your

Hi all, I was using the Newton-Raphson method to estimate paremeters in the model developed by my supervisor. However, when I interatively computed theta(t+1)=theta(t) - solve(H)*s (where the Hessian matrix and score vector were explicitely derived), I got the error message: Error in solve.default(H) : system is computationally singular: reciprocal condition number = 1.70568e-032. Assume my score

Hello all, I need a help. I am modeling a disease and a create a R function like that: Lambda<-function (x,date1,r,h,a){ ndate1 <- as.Date(date1, "%d/%m/%Y") t1 <- as.numeric(ndate1) x[order(x$i),] t <-x[,"t"] i <-x[,"i"] CONTAGIEUX <-x[,"CONTAGIEUX"] while ( t1 < min(t) ){ for (i in 1:length(i) ){ {for (j in

Hello,I'm still working with this data set, and trying to fit it with a nonlinear model. Here is my data > small <- c(507680,507670,508832,510184,511272,513380,515828,519160,525046,534046,547982,567124,590208,614506,637876,656846,669054,672976,668800,656070,637136,614342,590970,570752,554480,542882,535630,531276,528682,527682,527020,526834,526802,526860) test <- glm(dnorm(x),

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Hi Susan, The problem now is the usedPregSet. Take the instruction: %vreg13:sub_32bit<def> = ADD32rr %vreg13:sub_32bit, %EAX<kill>, %EFLAGS<imp-def,dead> %EAX will be added to usedPregSet when the instruction is encountered, but %vreg13 is a different class (64bit registers), so none of its candidates will conflict. In addition to checking membership of usedPregSet, you need

Hi everyone: The code I am analyzing is : int main() { int i = 0; printf("hello world!"); printf( "%d" , i ); } I want to get each place where printf is called, and the argument used during that call. so I write llvm pass code like: void Myfunction( Function & F){ for( Function::iterator b = F.begin() , be = F.end() ;

Hi Susan, The problem is that the allocator is re-using the 'preg', which is calculated for an operand that may have a subreg index, for loads and stores to a stack-slot. The stack slot always has the same width as vreg (which is the right behavior), but for operands with subreg indexes, 'preg''s class will be different from 'vreg', in which case you get the mismatched

Sorry about that. I created the assembly file and attached it (as math.txt). Susan On 11/11/2012 12:41 AM, Lang Hames wrote: > Hi Susan, > > It looks like the bitcode you have attached is corrupted. You should > make sure to attach it as a binary file. Alternatively you can attach > the LLVM assembly as text. You can generate an assembly file from > bitcode with: > >

Hi Susan, It looks like the bitcode you have attached is corrupted. You should make sure to attach it as a binary file. Alternatively you can attach the LLVM assembly as text. You can generate an assembly file from bitcode with: llvm-dis -o <asm file> <bitcode> Regards, Lang. On Fri, Nov 9, 2012 at 11:15 AM, Susan Horwitz <horwitz at cs.wisc.edu> wrote: > Thanks Lang,

Lang - Your fix does prevent the assembler errors, but it doesn't seem to produce correct assembly. I created a slightly modified version that, for each instruction that includes a vreg, adds a check that the preg selected is not already in that instruction. I've attached that version. I think that this version of Gcra.cpp should produce correct assembler, since it's allocating

Hi Susan, In x86-64 the REX prefix must be used to access an extended register (r8-r15 and their aliases), but cannot be used when accessing the high byte of the ABCD regs (AH, BH, CH, DH). In your test case you have hardcoded %vreg1 to R8B, and %vreg15 to AH, and the test case contains a copy between these registers. The copy simultaneously must have a REX prefix, and cannot have a REX prefix,

My tst.bc is attached. I had to use ssh to copy it from my office machine to my home laptop. In case that corrupts it, I also put a copy here: http://pages.cs.wisc.edu/~horwitz/LANG/tst.bc I created the file like this: clang -emit-llvm -O0 -c tst.c -o tst.bc opt -mem2reg tst.bc > tst.mem2reg mv tst.mem2reg tst.bc Susan On 11/4/2012 3:27 PM, Lang Hames wrote: > Hi Susan, >

Hi Lang, I looked more into one of the problems I'm now having, and I've attached 3 files: Gcra.cpp is like your version except that for two specific vregs it uses hard-coded pregs instead of the first in the corresponding class. bug1.c is an input that causes the failed assertion for me. If I use the non-debug version of LLVM-3.1 I instead get assembler errors like this: Error:

Hi Susan, With your bitcode file I am now able to reproduce the issue you're seeing. It looks like this is a problem with the naive rewriting from virtregs to physregs. It appears that the subreg field of physreg operands is ignored post-register allocation. In your testcase %vreg11:sub32 is being rewritten to RBX:sub32, but the :sub32 part is being quietly dropped when the assembly is

I still get a coredump: 0 libLLVM-3.1.so 0x00007f0158a4e67f 1 libLLVM-3.1.so 0x00007f0158a500ca 2 libpthread.so.0 0x0000003a86c0f500 3 libLLVM-3.1.so 0x00007f01583c346c 4 libLLVM-3.1.so 0x00007f0158546349 llvm::FPPassManager::runOnFunction(llvm::Function&) + 521 5 libLLVM-3.1.so 0x00007f01585463e3 llvm::FPPassManager::runOnModule(llvm::Module&) + 51 6 libLLVM-3.1.so

Lang - Your version does NOT work for me (i.e., I still get an error from the assembler when I run your code on my tst.c) unless I force compilation and assembly for a 32-bit X86 machine: llc -march=x86 -regalloc=gc tst.bc gcc -m32 tst.s My machine is a 64-bit machine. Maybe you are working with a different architecture and that's why it worked for you? I would be happy if the

Hi Susan, Without debugging symbols I can't make much out of that stack trace I'm afraid. I've attached my modified version of Gcra.cpp. I built llvm 3.1 by dropping this file into lib/CodeGen, and adding references to createGcra to include/lib/CodeGen/Passes.h and include/lib/CodeGen/LinkAllCodeGenComponents.h. (If you search for createRegAllocPBQP you'll see where to add the

Hi Susan, I tested the version of Gcra.cpp that I sent you on x86-64 systems running MacOS 10.8 and Ubuntu 12.04 (Linux 3.2.0). Could you send me the bitcode file you're compiling? Different bitcodes (due to different clang versions or applied optimizations) could account for the different results we're seeing. For reference I've attached the *.ll file that I have tested with, which

Hi Susan, Sorry for the delayed response. Thanks for the test cases - I'm looking in to this now. - Lang. On Mon, Nov 5, 2012 at 2:58 PM, Susan Horwitz <horwitz at cs.wisc.edu> wrote: > Hi Lang, > > I looked more into one of the problems I'm now having, and I've attached 3 > files: > > Gcra.cpp is like your version except that for two specific vregs it uses