similar to: APE: compar.gee( )

Hello, I am running the program COMPAR.GEE within the package APE. My dependent variable is binomial, while my independent variable is a multi-state categorical variable. The output reports an estimate for each state of the independent variable except the first one. For example, for the variable X with 3 states, the output is: intercept (estimate) X2 (estimate) X3 (estimate)

Hello, I am trying to run the APE program COMPAR.GEE with a model containing a categorical response variable and a mixture of continuous and categorical independent variables. The model runs when I have categorical (binary) response and two continuous independent variables (VAR1 and VAR2), but when I include a categorical (binary) independent variable (VAR3), I receive the following output with

Hi, I'm attempting a comparative analysis using the function compare.gee, package (ape), which uses phylogeny as a correlation matrix in gee (package gee), in R version 2.2.0 on a Windows XP PC. I'm looking to model the relationship between a continuous explanatory variable and a binary response variable for 600 species, taking into account the phylogeny of those species. Here's

Hello, These are implementations of strverscmp, scandir, alphasort and versionsort, and some test cases for them. I know these aren't in POSIX, but they're useful, nonetheless, and someone else might be interested in them. Regards, Luciano Rocha -- lfr 0/0 -------------- next part -------------- /* ----------------------------------------------------------------------- * * *

Add support for scandir() and alphasort() as defined in POSIX.1-2008. Signed-off-by: Mike Waychison <mikew at google.com> --- usr/include/dirent.h | 7 +++++ usr/klibc/Kbuild | 2 + usr/klibc/scandir.c | 76 ++++++++++++++++++++++++++++++++++++++++++++++++++ 3 files changed, 84 insertions(+), 1 deletions(-) create mode 100644 usr/klibc/scandir.c diff --git

Hello, Much like Charlie Wills a year ago, I am trying to run the APE program COMPAR.GEE with a model containing a categorical response variable and a continuous variable. My command code is : compar.gee(costusdata$Syndrome ~ costusdata$Stamen, phy = costustree, family = "binomial") I receive the following output with an error: Beginning Cgee S-function, @(#)

1. "dump_video.c" got reverted back by 5 years into 2004: https://trac.xiph.org/browser/trunk/theora/examples/dump_video.c https://trac.xiph.org/log/trunk/theora/examples/dump_video.c 2. "png2theora.c" (subminor) https://trac.xiph.org/browser/trunk/theora/examples/png2theora.c 207 /* Must hold: yuv_w >= w */ 208 yuv_w = (w + 15) & ~15; 209 210 /* Must hold:

Hello, How can one write the output of a GLM/GEE model to a text file, such that the results appear in text file in the same (or similar) format they appear in the R console? For instance, I have the following model: Traitresult <- compar.gee(Y~X, data = data, family = "binomial", phy = tree, scale.fix = TRUE, scale.value = 1) How would I write "Traitresult" to a text

hello, I am trying install Ruby 1.9.2 on my MacBook Pro Lion. I am following along with the install instructions at ruby.railstutorial.org. I am the point were you run rvm install 1.9.2. Below in what I see in the terminal when installing and below that my rvm log. Thanks for any help. rvm install 1.9.2 Installing Ruby from source to: /Users/user/.rvm/rubies/ruby-1.9.2-p290, this may take a

Hi!, I'm really hoping someone out there will be able to help me. I recently started my MSc dissertation on Population Projection Matrices, which has been going well until now. I am trying to set-up a general script that does a pairwise comparison of all elements in my matrices. So for example, given that I have the following matrix S: > S [,1] [,2] [,3] [1,]

Hello, I am trying to carry out a phylogenetic autoregression to test whether my data show a phylogenetic signal, but I keep calculating bizzare R-squared values. My script is: > library(ape) > x <-

This patchset applies to klibc mainline. This patchset introduces the ability to kinit to execute scripts or executable files present in in the initramfs before switching over to the root filesystem. It is implemented by first implementing scandir() and alphasort() as present in POSIX.1-2008 in klibc itself, and then using that as the basis for iterating and executing files via a run_scripts()

I've been comparing variables among objects (taxa) related by known trees, using phylogentically independent contrasts in the ape package, and want to move on to more complex models e.g. by using gls with appropriate correlation terms. My trees contain lots of (hard) polytomies and information about ancestors, which I've been including- creating fully dichotomous trees by using zero branch

I have put a compile hack in for older distros and pushed it out as syslinux-3.62-pre16; for those who have reported compilation problem on older distros I would greatly appreciate if you could confirm if it works now (it worked for me on a CentOS 3.9 VM.) -hpa

Buenas tardes, Quiero aplicar la función rbind y necesito tener los mismos nombres de columnas. Como tengo unas 195 variables en cada dataframe, necesito hacerlo de una forma rápida. Tengo 9 bases de datos y tengo que fusionar todas. ¿Como puedo comprobar que los nombres de las variables son los mismos? Y de lo contrario, ¿como detecto las diferencias? He probado con

[ Asked on -questions on Friday; re-asking now on -stable without cross-post] I recently upgraded a 4.11-REL machine to 6.0-REL and have run into some snags. While the installation from CD went fine, after configuring and enabling my ed0 NIC, bad things start to happen. FWIW, this machine is an ancient (hardware circa 1991, BIOS circa 1994) dual-Pentium 133 MHz machine, with EISA/PCI and