similar to: compile problem with gzfile

I'm a long time user of R, but I'm not a regular Mac user. I am now teaching in a room with a dozen Macs and I'm having a problem printing the graphics window. I'm using R 1.5.1 precompiled for Mac OS on Blue G3s with Mac OS 9.2. When I have the macintosh graphics device selected and use File, Print from the menu system, the OS attempts to print, but the machine hangs after a

I thought I would try compiling R this time with the ATLAS libraries. I have compiled ATLAS and I have the following libraries: libatlas.a libf77blas.a libptcblas.a libtstatlas.a libcblas.a liblapack.a libptf77blas.a Is it sufficient to use ' --with-blas=libatlas.a ' when configuring or do I need to specify any of the other libraries as well? -- William D. McCoy

I am trying to compile R-0.65 on a Sparc 20. I have gcc 2.7.2.2 and I have SC4.0. I used gcc to compile R-0.64.2 in July with no problems. Now when I run configure for R-0.65 I get the following message: >checking whether the C compiler (gcc ) works... no >configure: error: installation or configuration problem: C compiler cannot create executables. and then configure exits. I had no

Because my problem involves the RdbiPgSQL package, I sent a message similar to this one to the Bioconductor list. But while awaiting moderator approval of my message (because I am not a member of that list), it occurred to me to send it to R-help as the problem may be more general than just RdbiPgSQL. Here's my situation: I have been using RdbiPgSQL successfully for a year or two. I

I have just compiled and installed R-patched on a Sparc 20 running Solaris 2.5.1. The compilation and installation went fine except for the message: Bare word found where operator expected at /usr/src/R/R-patched/share/perl/R/Rdconv.pm line 1491, near "$txtout txt_header" (Missing operator before txt_header?) I get similar messages for lines 1390, 1405, 1420, and 1448 in Rdconv.pm.

>I am trying to compile R-0.65 on a Sparc 20. I have gcc 2.7.2.2 and I >have SC4.0. I used gcc to compile R-0.64.2 in July with no problems. >Now when I run configure for R-0.65 I get the following message: > >>checking whether the C compiler (gcc ) works... no >>configure: error: installation or configuration problem: C compiler cannot create executables. > >and

When I installed R 1.2.2 on a Sparc 20 running Solaris 2.5.1 and when I install a package, I get the messages: Bare word found where operator expected at /usr/local/lib/R/share/perl/R/Rdconv.pm line 1390, near "$txtout mywrap" (Missing operator before mywrap?) Bare word found where operator expected at /usr/local/lib/R/share/perl/R/Rdconv.pm line 1405, near "$txtout

I am trying to make R-1.8.1 on (SunOS shell1 5.8 Generic_108528-15 sun4u sparc SUNW,UltraAX-i2). I did ./configure make Configure output seems ok. The make proceeds until the following line appears, repeated indefinitely (until I break): ./config.status: ./confstat28489-19881/subs.frag: cannot overwrite existing file I suspect that this may involve write permissions (and maybe the umask set in

I'm having trouble with users transferring files to a solaris box running ossh v2.3.1p1 via sftp using ssh.com's windows client. The sftp client appears not to respect the users umask, creating files with either mode 666 or 600. We're using version 2.4.0 of the windows client. Any ideas? thanks, -Brett ----------------- Brett Longworth Systems Manager Department of Biology

Does R or any of its contributed libraries have a function similar to the filter() function in S-Plus? I can't seem to find a similar function. -- William D. McCoy Geosciences University of Massachusetts Amherst, MA 01003 -.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.- r-help mailing list -- Read http://www.ci.tuwien.ac.at/~hornik/R/R-FAQ.html Send

Dear R-help, I have a four-part question about regression, matrices, and sandwich package. 1) In the sandwich package, I would like to better understand the meat() function. >From the bread() documentation, for a simple OLS regression, bread() returns (1/n * X'X)^(-1) That is, for a simple regression (per the documentation on bread()): MyLM <- lm(y ~ x) bread(MyLM)

Full_Name: Vadim Ogranovich Version: Version 1.6.0 (2002-10-01) OS: Red Hat 7.1 Submission from: (NULL) (209.99.241.1) The following sequence of commands crashes my R session. The first weirdness happens after the second command that appears not to change the "foo.gz" file, no error generated. > con <- gzfile("foo.gz", open="w"); cat("goo\n",

Hi, I get an "internal error" when calling seek() twice on a gzfile connection. Create a gzip file: bigraw <- sample(charToRaw("abcdef"), 30000000, replace=TRUE) save(bigraw, file="bigraw.rda") Open it: con <- gzfile("bigraw.rda", "rb") Then: > seek(con, where=1) [1] 0 > seek(con, where=24980000) [1] 1

Hi, I am making multiple calls to gzfile() via read.table(), e.g. > x <- read.table( gzfile( "xxx.gz" ) ) After i do this many times (I haven't counted, but probably between 50 and 100 times) I get the error message: Error in open.connection(file, "r") : unable to open connection In addition: Warning message: cannot open compressed file 'xxx.gz' however, I

Found the simpliest way of seeing I bug I encountered doing "R CMD check --use-gct": Just launch R (with --vanilla), and do this: > ?gctorture # this work > gctorture() > ?gctorture Error in gzfile(file, "rb") : can only weakly reference/finalize reference objects # this does not It seems that when gctorture() is on gzfile() doesn't work.

Do you know any good editor R? -- View this message in context: http://www.nabble.com/Editor-R-tp23822342p23822342.html Sent from the R help mailing list archive at Nabble.com.

When I read a .gz file with readLines() in 3.4.3, it returns text (and a warning). In 3.5.0, it gives a warning, but no text. Is this expected behavior or a bug? 3.4.3: > source_file = "1k_annotation.gz" > readfile_con <- gzfile(source_file, "r") > readLines(readfile_con, n = 5) [1] "#chr\tpos\tref\talt\t <truncated output here> Warning message: In

If I open a tgz archive with gzfile and then parse it using readLines I miss the initial line of each member of the archive - and also the name of the file although the archive otherwise complete (but useless!). Is there any way within R to extract both the list of files in a tgz archive and to extract any one of these files? Clearly I can use zcat and tar on Linux, but I need this to work

Hello ... Are there any known problems or even gotchas to look out for when using a gzfile connection in read.csv/read.table in Windows? In the package PROcess, available at www.bioconductor.org/repository/devel/package/html/PROcess.html there are two files in the PROcess/inst/Test directory which are of the extension *.csv.gz. With both files, if I open up a gzfile connection, say: vv <-

Hi, I have some text files that do not have trailing \n on the last (incomplete) line; how do I read in the last line? e.g. here is a test case: [linux + R version 2.6.1 (2007-11-26) ] z <- gzfile("short.gz", open="w") cat("7\n5\n3", file=z) close(z) z <- gzfile('short.gz') readLines(z) [1] "7" "5" readLines would indicate that