similar to: Rweb: how to use source()

Hello, I am analysing several samples whose sizes are from 9 to 110. I would like to test their distribution with R, whether they are normal or not. I wonder which test for normality from R should I use . Thank you for help. Samuel Samuel BERTRAND Doctorant Laboratoire de Biomecanique LBM - ENSAM - CNRS UMR 8005 151, bd de l'Hopital 75013 PARIS Tel. +33 (0) 1 44 24 64 53 Fax +33 (0) 1

I don't know if there is some fault in compiling or a bug of the new R-1.7.0 version: cl.pam.2 <- pam(as.dist(1-cor(mel.data)),2) plot(cl.pam.2) perform a right partitioning and silhouette plot on the old R-1.6.2 instead "Error in clusplot.default(x$diss,...... ; x is not numeric" is the output on the new R-1.7.0. Same platform: RH8.0 i686. Some suggestions? A.S.

Dear all, Is there any generic algorithm code for optimization implemented in R? I searched without success. Thanks, -- Zhu Wang Statistical Science Department Southern Methodist University Phone: (214)768-2453 Fax: (214)768-4035 Email: zhuw at mail.smu.edu

I have written a function to plot data which will be used for various different chemistries. A simplified version is: plot_data <- function(risk,levels,chem,sd2,measure){ plot(risk, levels,main=paste ("per", sd2, measure, "\n in usual", chem)) } The problem is with the title. This works fine if the variable "chem" is just text, but if it is an expression then

History files saved using nFile Save History do not open when using File Load History. I notice that when they are saved they do not seem to have a file extension and there is no option to chose an extension. Is this a problem. Other than this it seems so simple that I can't see what the problem is. I've tried using loadhistory and savehistory with the same problems. The syntax guide

Good morning ! Today I found a strange, for my poor knowledge of R, behaviour of 'which' on a matrix: HAL9000> str(cluster.matrix) num [1:227, 1:6300] 2 2 2 2 2 2 2 2 2 2 ... HAL9000> class(cluster.matrix) [1] "matrix" HAL9000> ase <- cluster.matrix[1:5,1:5] HAL9000> ase [,1] [,2] [,3] [,4] [,5] [1,] 2 2 2 0 -2 [2,] 2 2 2 0 -2 [3,]

Hi dear R-list. I would superimpose many lines of class 'table' over a plot(table.0,type ="l",...), I tried 'lines(table.n,type="l",..)' but its behaviour is quite different from those of 'plot' : >plot(table,type="l"...) # start graph from x = 0 >lines(table,type="l"...) # start graph from x = 1 Some sugestions? Thanks

Hi all, I have currently been using the book Modern Applied Statistics with S from Venables and Ripley. At chapter 6 on Linear Statistical models I wanted to produce the plot as shown by "Figure 6.1" using Whiteside's data. xyplot command seems not to work on my version of "R"(version 1.7.0) running on different environments (Win XP, Win 98 and Win 2000). I then used the

Hi A very simple question on number formats. After some calculations, some variables I have come out looking like this: -1.892972e+00 Now apart from the fact that the "e+00" is completely redundant, I would rather have the number represented without the e bit. I want to export data like this to a text file and would rather have: -1.892972 than -1.892972e+00 I have tried

dear all, I try to update my Rversion fro 1.7.1 to 1.8.1 on linux. I have a problem when I try to install pacakges from Bioconductors with : source("http://www.bioconductor.org/getBioC.R") and getBioC(relLevel="release") somme errors append and when I make a library(affy) for example I obtain : > library(affy) Error in setIs("character",

Hi, In the following code, I got an error meesage if an input file is empty, and the program stopped running. Could someone to tell me how to handle this problem. I want the program to keep running. Thanks. for i in [1:3] { file=paste("file", i, ".dat") x <- read.data(file) x(11) plot(x); dev.off() }

hello which package do you recommend for spatial autocorrelation ? regards Ahmet Temiz ______________________________________ Inflex - installed on mailserver for domain @deprem.gov.tr Queries to: postmaster at deprem.gov.tr ______________________________________ The views and opinions expressed in this e-mail message are ...{{dropped}}

Dear expeRts, I collect some lab specific functions for a package. Some of this functions need initial data (ini files written in R-code). My question is: Where is the place in the package structure for such files; how to load the files? I think something like: source(paste(R.home(),"/library/__pkg__/data/__.ini.R", sep="")) looks a bit clumsy. I haven't find something

Hi, I've searched the archives for a discussion on the use of R for developing "small world" or "scale-free" network models but have been unable to dig anything up. Is anyone working on these types of models using R, and if so, have you found this language amenable to their development? thanks, matt farnsworth

As a newbie to R, I need to learn my way around (no previous experience of S).What books, doc for R are recommended? I'm interested primarly in non linear regression and process modelling (and have downloaded the R documentation from the site). Thanks for all tips Anne

Dear all, I am thinking of writing my own functions in s-plus (or in R). I just know how to work with S-plus / R built-in functions. Therefore, I'm a beginner in S programming. I am looking for some on-line documentation that is well written about "Programming in S language" where control stuctures / loops / vectorization and necessery sequences of S programming are

I would write in tab-text file a table like this one: TAB colname1 TAB colname2 TAB TAB... colnameN rowname1 # # # rowname2 # # # rownameM # # # then I wrote something like: mymatrix <- matrix(nrow=M,ncol=N,byrow=T) rownames(mymatrix) <- chvector1 colnames(mymatrix) <- chvector2

Hi, I have installed R 1.9.0 under Windows XP. When I used "Packages->Install Package(s) from CRAN..." to install the package 'gregmisc', I got this message: > local({a <- CRAN.packages() + install.packages(select.list(a[,1],,TRUE), .libPaths()[1], available=a)}) trying URL `http://cran.r-project.org/bin/windows/contrib/1.9/PACKAGES' Content type `text/plain;

Hello! I don't know if there is some R-package able to associate ontology to a long list of GeneBank Name (a txt-tab file or an XML file), i.e. I would as output a formatted file with 4 columns (1:GeneBank Name 2,3,4:ontology). I know that I have to perform a mapping of genes, I got a look on AnnBuilder pkg, but I 've not idea from where to start. Some suggestion? Thanks in advance!

Hi! Probably I perform this question because I did'nt still understand the R-philosophy. I have to build many matrix, with different dimensions, and I would to assign them a same 'prefix' name, i.e. "aval", but, obviuosly different suffix, something like: for (i in 1:n) { aval%i% <- matrix(scan(data....),nrow=nr[i],ncol=nc[i] ... } where "%i%"