Displaying 20 results from an estimated 700 matches similar to: "non linear regression with R"
2023 Dec 23
1
ssh-keygen generator 3 broken.
Hello, I was re-generating the moduli for SSH, and during that process I noticed that, when running the following command:
ssh-keygen -M screen -O prime-tests=600 -O generator=3 -f moduli-2048-01.candidates moduli-2048-01c
It does not produce any errors, only the following:
ebug2: ???1467763: (4) Sophie-Germain
debug2: ???1467763: generator 0 != 3
debug2: ???1467764: (4) Sophie-Germain
2008 Jan 27
3
Network issue in dom0
Hello,
I have a network issue in dom0; I''m not sure if it''s a configuration
problem or a design problem in my setup.
My setup:
The server (dom0) runs Ubuntu 7.10, Xen was installed using apt-get
(means version: Xen 3.10, Kernel 2.6.22-14). This server has 4 NICs. I
use bridged networking with my own script which creates 4 bridges
("$dir/network-bridge"
2013 Oct 10
1
Rcpp and mclapply
Dear all,
I have an R script that uses Rcpp, and I have been trying to parallelize
it using mclapply (I tried with the multicore and the parallel library)
Sometimes (not always, interestingly), the CPU use for each core drops,
usually so that the total over all cores reaches 100%, i.e., as fast as if
using just one single core fully. I tried my code directly from within
emacs, and also using a
2024 Jul 11
1
Issues with Ubuntu 22.04 and Installing the Latest Version of R (R 4.4.1) to Docker Image
Yes, keep the $(lsb-release -cs) there. This allows you to change the version of the OS without having to change anything else (for instance we are migrating all of our docker to 24.04 LTS right now, so we only have to modify the FROM entry and all of our Dockerfile will still work).
From: Gerber, Lauren J <lauren.gerber at helsinki.fi>
Date: Thursday, July 11, 2024 at 2:21?AM
To:
1998 May 29
1
R-beta: multiv package from CRAN
Hallo Friedrich,
I have read your announcement, downloaded and installed it in R-0.61.3.
But now I have problems :)
> hc <- hierclust(dist(t(pollen)), method=3)
Error in pmatch(x, table) : argument is not of mode character
> hc <- hclust(dist(t(pollen)))
> members(hc)
Error in .Fortran("assgn", n = as.integer(n), nplus1 =
as.integer(nplus1), : C/Fortran function not in
2024 Jul 08
1
Issues with Ubuntu 22.04 and Installing the Latest Version of R (R 4.4.1) to Docker Image
And sorry for the spam, but I meant to say that the Dockerfile is basically following the steps from https://cloud.r-project.org/bin/linux/ubuntu/ as Lauren was trying to do but start by installing the pre-requisites needed to deploy the r-base package on a Ubuntu 22.04 Docker image (which is NOT a base 22.04 but a minimally striped version of 22.04).
From: marcoblanchette at icloud.com
2024 Jul 11
1
Issues with Ubuntu 22.04 and Installing the Latest Version of R (R 4.4.1) to Docker Image
Hi Marco,
Thank you for the follow up email.
In the line below, do I replace $(lsb-release -cs) with jammy (Ubuntu 22.04) or leave it alone:
Add-apt-repository ?deb https://cloud.r-project.org/bin/linux/ubuntu jammy-cran40/?
It?s good to know about installations for Bioconductor. I am not currently using it, but I may need it in the future for other projects.
Br,
Lauren
--
Lauren J. Gerber
2024 Oct 15
1
R Package: 'ggbreak' in Dockerfile
Lauren,
On 15 October 2024 at 13:51, Gerber, Lauren J wrote:
| I just tried fixing my script and added library(BiocManager) before library
| (ggbreak), then rebuilt the image, and am still getting the same error.
You need _two_ distinct commands. First
install.packages("BiocManager")
and second once that is done use it to install 'ggbreak' from BioConductor
2005 Apr 06
2
conditional selection with Factors
Hi All,
I want to select a level of a factor variable from a dataset. I have the folowing data:
dataset: use
factor: month (use$month, levels=February, July)
> use[1:5,]
month registration use department size
1 February KKG151GP Y Safety 1.6
To select February I tried:
> use[use$month=="February"]
Error in "[.data.frame"(use, use$month ==
2006 Sep 08
2
Multiple matrix multiplication with two 3-dimensional arrays
Hi,
I need to do several matrix multiplications with
the corresponding matrices forming two
3-dimentional arrays. To illustrate my problem,
let's say I have the following 3-dimensional arrays:
array1 <- array(1:30,dim=c(3,2,5))
array2 <- array(1:20,dim=c(2,2,5))
I know that I can get what I want with the following computation :
result <- array(dim=c(dim(array1)[1],
2018 May 24
2
question on setting ulimit on debian
Hi,
I?ve been trying to increase the number of open files for the dovecot user on Debian 9 and have so far, failed! I?ve tried this:
# cat /etc/security/limits.d/limits_dovecot.conf
dovecot soft nofile 2048
dovecot hard nofile 8192
# cat /etc/systemd/system/dovecot.service.d/service.conf
LimitNOFILE=8192
But to no avail:
# prlimit -p 27208|grep -i
2017 Jun 05
4
10-ssl.conf: Unknown setting: ssl / debian 1:2.2.13-12~deb8u
# doveconf -a
# 2.2.13: /etc/dovecot/dovecot.conf
doveconf: Fatal: Error in configuration file /etc/dovecot/conf.d/10-ssl.conf line 6: Unknown setting: ssl
doveconf: Error: managesieve-login: dump-capability process returned 89
doveconf: Fatal: Error in configuration file /etc/dovecot/conf.d/10-master.conf line 35: Invalid size: $default_vsz_limit
# grep default_vsz_limit
2005 Mar 31
2
Using kmeans given cluster centroids and data with NAs
Hello,
I have used the functions agnes and cutree to cluster my data (4977
objects x 22 variables) into 8 clusters. I would like to refine the
solution using a k-means or similar algorithm, setting the initial
cluster centres as the group means from agnes. However my data matrix
has NA's in it and the function kmeans does not appear to accept this?
> dim(centres)
[1] 8 22
> dim(data)
2024 Jul 10
1
Issues with Ubuntu 22.04 and Installing the Latest Version of R (R 4.4.1) to Docker Image
Lauren, little oversight from my Dockerfile, if you want to follow the CRAN steps and get the R from the cloud.r-project.org server, you want to replace
&& add-apt-repository -y "ppa:marutter/rrutter4.0"
With
&& add-apt-repository "deb https://cloud.r-project.org/bin/linux/ubuntu $(lsb_release -cs)-cran40/"
The ppa repo is Michael Rutter personal repo
2004 Aug 13
2
Problem with samba and sophie
Hello,
I'm using Sambsa 2.28 and I've just installed Sophos anti-virus and
sophie 3.04rc2.
If I run sophie standalone to scan a directory/folder it all runs ok, as
it also does in daemon mode.
I've changed my smb.conf file to specify
vfs option=/usr/lib/samba/vscan-sophos.so
When I access the share I receive the following in the syslog:
samba smbd_vscan_sophos[6649]: ERROR:
2017 Jun 05
2
10-ssl.conf: Unknown setting: ssl / debian 1:2.2.13-12~deb8u
Sophie
( ?? ?? ??)
> On 5 Jun 2017, at 09:42, Matthias Sitte <matthias at familie-sitte.org> wrote:
>
> I have the feeling that the config file is incorrect and loading
> subsequent files results in reading in entries at the wrong level?
>
> Could you attach the full 10-master.conf?
>
> Matthias
>
>
> On 06/05/2017 09:30 AM, Sophie Loewenthal wrote:
2008 Feb 15
7
History of R
Earlier today I sent a question to Frank Harrell as an R developer with
whom I am most familiar. He suggested also that I put my questions to
the list for additional responses. Next month I'll be giving a talk on
R as an example of high quality open source software. I think there is
much to learn from R as a high quality extensible product that (at least
as far as I can tell) has never
2024 Jul 08
2
Issues with Ubuntu 22.04 and Installing the Latest Version of R (R 4.4.1) to Docker Image
Hmm? It?s picking up the pre-made binary from ppa:marutter/rrutter4.0 using apt-get install. Isn?t it what Lauren?s trying to do?
From: Dirk Eddelbuettel <edd at debian.org>
Date: Monday, July 8, 2024 at 11:57?AM
To: marcoblanchette at icloud.com <marcoblanchette at icloud.com>
Cc: Gerber, Lauren J <lauren.gerber at helsinki.fi>, r-sig-debian at r-project.org <r-sig-debian
2017 Jun 05
2
10-ssl.conf: Unknown setting: ssl / debian 1:2.2.13-12~deb8u
Can you create file /etc/dovecot/conf.d/10-ssl.conf
and type in 'ssl = yes'
and nothing else? does it work after this? leave the default_vsz_limit
off for now.
Aki
On 05.06.2017 10:34, Aki Tuomi wrote:
> Can you remove the offending settings, and then send it?
>
> Aki
>
>
> On 05.06.2017 10:30, Sophie Loewenthal wrote:
>> # doveconf -a
>> # 2.2.13:
2006 Jan 20
3
Troubles with the function rmultinom.c of the R's Random Number Generator
Hi,
I'm simulating a Markov chain in Fortran interfaced with R-2.2.1 in order
to generate data according to a Markov Random Field called the Potts model.
R Version:
platform i686-pc-linux-gnu
arch i686
os linux-gnu
system i686, linux-gnu
status
major 2
minor 2.1
year 2005
month 12
day 20
svn rev 36812
Each loop of my Fortran calls the function rmultinom.c