similar to: a. crossing branches with hclust, b. plot.dendrogram

I use the following code to scan a (limited) parameter space of clustering strategies ... data <- read.table(... dataTranspose <- t(data) distMeth <- c("euclidean", "maximum", "manhattan", "canberra", "binary" ) clustMeth <- c("ward",

I don't know the Russell-Rao coefficient but maybe this will help: You can compute the number of times y and x are both 1 (that's what your function f does) by counting 1s in y*x, i.e., sum(y*x), aka t(y)%*%x. Ordinary matrix multiplication does this row-by-column, so if M and N are two binary matrices, M%*%t(N) will have (i,j) entry equal to the count of 1s in common to row i of M and

Hello! Can I use DBM databases (as they are used in Perl) for the import of large datasets in R? Thanks in advance for your help, Petra Steiner - --------------------------------------------------- Petra Steiner Arbeitsbereich Linguistik Universitaet Muenster Huefferstrasse 27 48149 Muenster

Dear all, which font do I have to choose to use German umlauts at x/ylab in plot? Do I have to change Rdevga; and how? Or should I use these Hershey vectors? I looked quite a long time for a solution, which should be easy, so I thought I'd better ask here. Maybe some other people have already solved this problem. Regards, Petra - --------------------------------------------------- Petra

Hello everybody, Is there in R a so called box m-test for testing the equality of the variance/cov. matrix for checking on homoscedasticity? I could not find it among the traditional packages for multivariate statistics... Petra -- Petra Wallem Centro de Estudios Avanzados en Ecolog伱伃a & Biodiversidad (CASEB) Departamento de Ecolog伱伃a Facultad de Ciencias Biol伱伋gicas Pontificia

Hello again, I'm glad to tell you that I fixed that error. It was gcc compiler error and I found the solution right here: https://askubuntu.com/questions/26498/choose-gcc-and-g-version (this link was sent by Harutyun Khachatryan). I changed the versions of gcc and g++ from 4.3 and 4.4 to 4.8 and 4.9 and it worked. I also posted the solution in the gist I've sent you before. Thank you

Hello to all, I am using ArcView 3.2 under Wine. For now I have been able to do what I need, except for the projection utility... it seems that I am missing some dll, but I have no clue which ones could be... If somebody knows the solution, please let me know. I am new to Wine, and have no clue how to search for the right dll... Thanks a lot to all of you and to this great Wine-project!!! Petra

Dear everyone, I have looked all over the internet but I cannot find a way to solve my problem. In my data I want to sum a couple of variables. Some of these variables have NA values, and when I add them together, the result is NA dat <- data.frame( id = gl(5,1), var1 = rnorm(5, 10), var2 = rnorm(5, 7), var3 = rnorm(5, 6), var4 = rnorm(5, 3), var5 = rnorm(5, 8) ) dat[3,3] <- NA dat[4,5]

Okay, admittedly I'm running an old version 2.0.5, but, why do I have to set the eXecute permission in Linux before Samba will let a Windows client see any files? Why would execute have anything to do with read and/or write? I would think I could set -rw-rw---- or -rw-rw-rw- and be just fine, but oh no, you get an empty list and cannot create new files until I change it to -rwxrwx--- or

Hello, I analyse some free-sorting data so I use hierarchical clustering. I want to compare my proximity matrix with the tree representation to evalute the fitting. (stress, cophenetic correlation (pearson's correlation)...) "The cophenetic similarity of two objects a and b is defined as the similarity level at wich objects a and b become members of the same cluster during the course of

Hello, a. is there a possibility to obtain a distance matrix with the cosine between vectors?? hclust, hierclust, dist will not work and seem to be hard to extend. b. if there is not: Is the cosine between vectors implemented somewhere? Thanks for all hints and advice! Petra Steiner -------------- next part -------------- An HTML attachment was scrubbed... URL:

Hello, In package survival should be a dataset bladder1. http://stat.ethz.ch/R-manual/R-devel/library/survival/html/bladder.html I can not open it (not found). Both bladder and bladder2 are there. Thanks, Petra

Hello every body, I am trying to do a factorial anova analysis following this model: model<-anova(lm(responsevariable~factorA*factorB)) model<-anova(lm(luz$dosel~luz$estado*luz$Bosque)) Df Sum Sq Mean Sq F value Pr(>F) estado 1 6931.1 6931.1 41.6455 7.974e-06 *** Bosque 1 36.6 36.6 0.2197 0.6456 estado:Bosque 1 36.6 36.6 0.2197 0.6456 Residuals

Hi everybody, I am starting my friendship with R. Now I want to do a Correspondence Analysis using the vegan library or multiv library. Both give me the same results which differ from the ones I get running other programs like Statistica... I wounder if there is a problem with my matrix. I have cualitataive variable in the columns and sampling units in the rows... I import my matrix into R

Sorry for the spam, but we're looking for a postdoc with compiler expertise, and in particular LLVM, for ICSI's networking group. I thought this list might have somebody interested in such a position: http://www.icsi.berkeley.edu/about/netjob.html Feel free to forward further. Thanks, Robin -- Robin Sommer * Phone +1 (510) 722-6541 * robin at icsi.berkeley.edu ICSI/LBNL *

Hi, i can store the disk of a guest in a plain partition which isn't formatted. That's no problem, i did it already several times, although the promised speed increase didn't appear. But is it possible to create from such a guest a snapshot in a .sn file using virsh ? Regards, Bernd -- Bernd Lentes Systemadministration Institut für Entwicklungsgenetik Gebäude 35.34 - Raum

Hi, I have some problems with usb da and uscanner giving me I/O-errors. This is on a ASRock K7VT2 board. If there is anything else I could do (testing patches, providing further info), please let me know. 4.8-STABLE from 04.08.2003: - MBO USB-MultiCardReader 6-in-1 mount_msdos => Input/output error - Epson Perfection 1260 Scanner scanimage --test => Error during device I/O

Dear all, below you find enclosed my message from January 9th and my program (attention: beginner). Thanks for both answers! a. However, as far as I know the cosine is not the same as the Pearson correlation (only in special cases). b. Reid Huntsinger's hint was very useful, however I had to transpose the matrix first, for I want to calculate the distance of the _rows_. Regards, Petra

Hello everyone, I installed R and trying to install additional package: `rgl`. The problem is, I keep getting this error: installation of package ?rgl? had non-zero exit status All warnings, installation log and R version info in available in my gist: https://gist.github.com/mateuszcisek/2337bd92695b7ddf10bca10ea403c712 (it was too long to use it all in the message). I use Linux Mint 18.2.

http://bugzilla.netfilter.org/show_bug.cgi?id=536 pavlin at icsi.berkeley.edu changed: What |Removed |Added ---------------------------------------------------------------------------- Severity|trivial |blocker Priority|P2 |P1 ------- Comment #1 from pavlin at icsi.berkeley.edu 2008-12-19