similar to: Truncating y axis

Hi all, I have the following dataset, call it test.data (30 columns, and one row named "0"): ADVP ADVP AP AP CONJ CONJ CP CP DU DU INF INF MWU MWU NP NP PP PP PPRT PPRT REL REL SMN SMN SSB SSB SV1 SV1 TI TI 0 96.85 2.05 89.07 2.54 70.91 2.37 94.92 3.46 82.31 11.33 40.96 2.25 98.06 3.43 90.77 17.63 86.60 10.78 60.27 1.32 93.27 0.97 77.60

Dear all, I'm trying to install lme4 (after having installed R 2.4.0 from source, and having installed the latest Matrix package). lme4 fails with the following message: pedigree.o definition of _lme4_xSym in section (__DATA,__common) pedigree.o definition of _lme4_ySym in section (__DATA,__common) make: *** [lme4.so] Error 1 ERROR: compilation failed for package 'lme4' ** Removing

Hello everybody, I'm trying to subset a data frame "foo", which looks like this: sent cond raw V1 10 2 A 614 7 11 2 A 724 6 12 2 A 641 5 13 2 A 665 9 33 5 B 510 7 34 5 B 659 7 35 5 B 607 6 37 5 B 467 8 38 5 B 586 9 39 5 B 523 10 57 8 C 858 8 58 8 C 513 9 59 8 C

Hi all, I'm building a plot of the values in tmeant (below) against positions 1 to 5, using matplot. tmeant looks like this: case1 case2 pos1 861.8466 818.5909 pos2 961.2841 976.3466 pos3 878.6080 1262.8523 pos4 950.8011 1129.6080 pos5 968.1080 1063.3920 I also have lower (object tl) and upper (object tu) bounds on the confidence intervals as follows: tl: pos1

Hi, I am trying to install the nlme package, but during installation I get the message <snip> pdSymm text html latex example plot.ACF text html latex example missing link(s): xyplot plot.Variogram text html latex example missing link(s): xyplot plot.augPred

Hi all, I'm trying to figure out the example about mixed models in the Pinheiro and Bates book (Mixed-Effects Models in S and S-Plus, 2000, pp. 135-137). One thing I don't understand is: When I run the command fm1Orth.lm <- lm( distance ~ age, Orthodont ) followed by fm2Orth.lm <- update( fm1Orth.lm, formula = distance ~ Sex*age ) and then do summary(fm2Orth.lm)

Hi, My apologies for sending this message earlier to the wrong list (next time I'll wait till I'm fully awake). I'm a new R user. I want to do the following: I want to pass a filename to R repeatedly (about 400 times) in order to do a repetitive task (calculating regressions). The way I'm setting it up is to write a bash script that will create an R source file on the fly for

Hi all, I figured out some things about an earlier question I posted today; this is a new question: I have a for-loop in which I have the following lines for (i in list.files(pattern = "*.dmp")) { currentfile <- read.table(i) vecrawrts <- as.vector(currentfile$V3) ... } Now, vecrawrts is numeric, but if I run the script on all the files with extension .dmp, I get the

Dear R users, Many of you are aware of the statistical package lme4 used in R for carrying out mixed-effects modeling. The lme4 R-Forge website [ https://r-forge.r-project.org/projects/lme4/] is going to maintain a list of all dissertations and articles (accepted for publication, in press, or published) that use lme4 or its precursor, nlme. It would be helpful if members of this list could

Hi all, All the files related to the question below are in http://ling.ohio-state.edu/~vasishth/TempRdir/ I've been using a script (called newresiduals.R, the code is in the above directory; I wanted to avoid cluttering up this message) that is run in the following manner at the command prompt: R --vanilla "wordlen-2-01-g1" < newresiduals.R What it does is: it goes through a

Is there a method for creating "animations" using R. Or is there another piece of software (unix perferrably) that can generate a "movie" from many ps/eps/gif/jpg files? Thanks, Jeff. Jeff D. Hamann Hamann, Donald and Associates PO Box 1421 Corvallis, Oregon USA 97339-1421 Bus. 541-753-7333 Cell. 541-740-5988 jeff_hamann at hamanndonald.com www.hamanndonald.com

Thanks for the advice, folks! Shravan Vasishth <vasishth at ling.ohio-state.edu> Try pico. There's no substitute for/comparison with emacs, though, IMHO. but just to be sure: you don't have to have ESS to use (x)emacs for editing R scripts. Sven Garbade <garbade at psy.uni-muenchen.de> ESS can be installed via rpm on Mandrake. baron at cattell.psych.upenn.edu (Jonathan

Hi all, This question is about using the linear-mixed effects model for a within-subjects experiment. The experiment description: Each subject was asked to read a series of sentences (in Hindi) on a computer screen, and pressed the space bar to see each word in the sentence successively. The amount of time spent on each word was recorded on the computer, in milliseconds; this is the dependent

Hi all, Could you point me to a script editor in Linux that will allow me to a somewhat easy pasting of section(s) of an R script or function into R for execution? Something like WinEdt+RWinEdt macro in R for Windows? (My time is a bit pressed. I haven't succeeded in my attempts to install ESS for XEmacs. No doubt due to my confusion and lack of competence. I am abandoning it for the

Hi Folks, I'm interested in looking (in a beginner's amateurish way) at prosodic/phonetic analysis of recorded speech. In particular I would want to use R to formulate and evaluate specific models. So I would like to ask R people for their recommendations for a program which would a) Take as input a sound file in one of the common formats (".wav", ".au") b)

Hi. I have defined a function, f1, that calls another function, f2. Inside f1 an intermediate variable called nm1 is created; it is a matrix. f2 takes a matrix argument, and I defined f2 (schematically) as follows: f2<-function(nmArg1=nm1,...){nC<-ncol(nmArg1); ... } so that it expects nm1 as the default value of its argument. f1 is defined (schematically) as:

Hi all, Could you please help me? I am trying to understand why this line works: lm1x = lm(y~X-1, tmp) Here it seems that I was combining the design matrix and the data frame... And X below is not a single column, in fact, it's a bunch of columns in matrix form... I don't understand why this line works... Is it just luck, i.e. if we change the data-set and/or formulas to something

This is more a Ruby than a Rails question -- feel free to redirect me as appropriate -- but either this is a Ruby 1.9 bug or I have some serious misunderstanding. Essentially, I''ve caught the <=> operator returning nil -- not -1, 0, or 1, but nil. Schematically: class A attr_accessor :slot fun matches?(s) p "s <=> @slot = #{s <=> @slot}" return

Hi, I'm running some data simulations using (mixed effects)* regression models that show difficulty to converge. Therefore, I seek a way of capturing warnings (of false convergence) inside a loop. Inside that loop, I modify data and estimate a model. I do so many times with slightly different modifications of the data. Next, I extract some of the model parameters and store these in a matrix.

Hello everyone, I'd like to have suggestions about a common basic statistical approach, hope to be useful also for other R beginners. When you first get some data (i.e length of river) you may want to look at its distribution. Then you probably want to find which law follows this distribution, and to test the goodness of the fit. For doing this simple analysis I am writing some code