similar to: cluster- binary data.

I'm resending this bug report with a new example. As seen below, cut.dendrogram gives an error message for some heights, but not for others and with some datasets adn not others. I can't see why. Last time I unwittingly sent my message with HTML formatting. This time I'm travelling and using an e-mail system that I am unfamiliar with. As far as I can see, I am not using HTML.

Hi, I'm a PhD student and I want to use the function 'daisy' from the package 'cluster' to compute dissimilarities. My variables are of mixed types so I use the argument 'stand' in daisy to define the type of my variables. I have the following error message : Warning message: binary variable(s) 13, 16, 17, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35,

Regarding Tengfei Yin's post about an error trying to install "cluster" in 2.13.0, I have gotten an error with this package when trying to install the released version of 2.12.0. Here is the output on an Ubuntu Linux system: begin installing recommended package cluster * installing *source* package 'cluster' ... ** libs make[3]: Entering directory

I had installed R from source on Fedora Core 3. Then I upgraded to Fedora Core 4, but left R alone. R worked fine, until I trued to update.packages(). Even then, many packages updated just fine, but two of them, cluster and mgcv, failed with the following error message (using cluster as an example): gcc -shared -L/usr/local/lib -o cluster.so clara.o daisy.o dysta.o fanny.o meet.o mona.o pam.o

Hi dear all It's the first time for me to install a developmental version of R, I came across following errors, my system is DISTRIB_ID=Ubuntu DISTRIB_RELEASE=10.04 DISTRIB_CODENAME=lucid DISTRIB_DESCRIPTION="Ubuntu 10.04.1 LTS" I downloaded the dev version of R in cran R source, and downloaded the recommended packages by using wget as described in R manual, and run

Hi there fellow R users, R has many different clustering packages (e.g. mclust,cluster,e1071). However, can anyone recommend a method to deal with data sets that contain categorial and continuous variables? Regards Wayne KSS Ltd Seventh Floor St James's Buildings 79 Oxford Street Manchester M1 6SS England Company Registration Number 2800886 Tel: +44 (0) 161 228 0040 Fax: +44 (0)

Hello, I'm using R 1.40 on MacOS X X.1.2 (installed via the fink package manager). To upgrade my installed packages, I tried to use update.packages() today. All went well for most packages, with the exception of KernSmooth and cluster. In both cases, libraries were not found although I think they are present. Here's what happened: ---------------------------------- >

Hi List, I am looking for a variable selection procedure with a forward-backward selection method. Firstly, it is meant to work with the cophenetic correlation coefficient (CPCC) and intended to find the variable combination with the highest cophenetic correlation. Secondly, it is aimed at Gower metric with wards method (though this could be easily extended) aimed at categorical data. What I

Doing the normal build process [1] for a first time with a R 2.0.0 snapshot -- the Sep 21 version I uploaded to Debian's 'experimental' section two days ago, ended in failure. The package in question is cluster 1.9.6 which should be 2.0.0-ready. The (partial) log follows: ----------------------------------------------------------------------------- [...] g77 -mieee-fp -fPIC -g -O2

Please cc me when replying to the list. With Version 2.1.1 (2005-06-20) on Power Mac G5 running Mac OS X 10.4.2 (8C46): Some compilations work (e.g., MatchIt, RGraphics, Zelig), and some don't, e.g., mgcv, spatstat, and the following (Matrix, cluster): trying URL 'http://www.ibiblio.org/pub/languages/R/CRAN/src/contrib/ Matrix_0.98-3.tar.gz' Content type

Hello, I would like to use my own dissimilarity matrix in a PAM clustering with method "pam" (cluster package) instead of a dissimilarity matrix created by daisy. I read data from a file containing the dissimilarity values using "read.csv". This creates a matrix (alternatively: an array or vector) which is not accepted by "pam": A call

Hi I have a problem using the package cluster on my binary data. I want to try mona at first. But i get the an error. hc<-read.table("all.txt", header=TRUE, sep="\t", row.names=1) srt(hc) `data.frame': 51 obs. of 59 variables: $ G1p : int 2 1 1 1 1 1 1 1 1 1 ... $ G1q : int 1 1 1 1 1 1 1 1 1 1 ... $ G2p : int 1 1 1 1 1 1 1 1 1 1 ... $ G2q : int 1 1 1 1 1 1

This message is in MIME format. Since your mail reader does not understand this format, some or all of this message may not be legible. ------_=_NextPart_000_01C35A53.75780090 Content-Type: text/plain; charset="iso-8859-1" Anyone have a clue why hclust() and agnes() produce different results in the example below when both use method="average"?? I'm not able to reproduce

Dear Rhelp,   I did a daisy on 5 lifestyle variables, 3 of which were nominal and 2 were ordinal and assigned types “nominal” and “ordinal” for the variables, respectively.  I got an output indicating their types as “I” for interval(?). Doing it on the Rdata example “flower” gave the same types in the output as the types they were assigned to.  Why is this so? Below are the codes and outputs.  

Hello all, I what to print the banner plot that is output from the mona method in the cluster package but the problem is I dont want to print all that red ink. Here is an example: data(animals) ma <- mona(animals) ma ## Plot similar to Figure 10 in Struyf et al (1996) plot(ma) I can change the bar color by using the argument col=c(0,0) - plot(ma,col=c(0,0)) - but then the variable labels also

Hi! On the cran "package source" page, to each package there are the "reference manual" in pdf format with a nice title page. I observed that during the R CMD check pkg a pkg-manual.div are generated in the pgk.Rcheck directory. But the nice title page are missing. During the package build and install no div files are produced. Which opitions I have to pass during the build

Hi! I have installed the new R on windows. I wanted to reinstall the XML package. I am not able to find the XML.zip anymore. I am quite shure that they where a windows binary version. Has anyone old XML windows binary? Eryk Dipl. bio-chem. Eryk Witold Wolski @ MPI-MG Dep. Vertebrate Genomics Ihnestrasse 73 14195 Berlin 'v' tel: 0049-30-84131285 / \ mail:

I am currently using the function daisy in package cluster to create a dissimilarity matrix because my multivariate dataset contain missing data and variables of various types including factors, symmetric and asymmetric binary and quantitative. This is a step prior to using pco within ecodist. There is a warning which comes twice ">NAs introduced by coercion" I've used

Hi! I would like to give my objects functions like "subset", "union", et cetera and name it also in this way. But this functions names are already used in the base package and they are not generic. I am right in that if they would be generic then i still can use the neat names with my objects? I have the impression that there are more and more packages are going to be

Hello Everyone, Since rebooting my Centos 6.10 Openvz server "daisy" yesterday, I am getting horrible system performance.? /var/log/messages is full of HDIO_GET_IDENTITY failed for /dev/sdb.? The latest entries look like this: Apr 22 08:51:32 daisy kernel: [141224.655699] CT: 1005: stopped Apr 22 08:55:04 daisy ata_id[21513]: HDIO_GET_IDENTITY failed for '/dev/sdb' Apr 22