similar to: r-announce (was RE: about multtest...)

R 1.7.1 on Windows XP The "normal Q-Q plot" produced by plot.lm() mislabels points when the model is fitted using na.action=na.exclude. Example: x <- 1:50 y <- x + rnorm(50) y[c(5,10,15)] <- NA # insert some NA's y[40] <- 50 # add an outlier plot(lm(y ~ x, na.action=na.omit)) # outlier correctly labeled in all # four plots

Dear R-help, Can some one tell me what could be the problem? I downloaded the R-1.7.1 source and try to compile it on WinXP. "make", "make bitmapdll", "make tcl", "make recommended" all ran w/o problem. However, when I ran "make docs", it failed at creating refman.pdf, with no apparent error that I could see. I have attached the log file

What would be nice is to have something like a "robust" task view... Andy From: Berton Gunter > > Many thanks for this Martin. There now are several packages > with what appear to be overlapping functions (or at least > algorithms). Besides those you mentioned, "robust" and > "roblm" are at least two others. Any recommendations about > how or

Hi people, Does anybody know some Density-Based Method for clustering implemented in R? Thanks, Fernando Prass _______________________________________________________

Dear R-help, A colleague of mine was running some code on two of our boxes, and noticed a rather large difference in running time. We've so far isolated the problem to the difference between R 1.7.1 and 1.8.0, but not more than that. The exact same code took 933.5 seconds in 1.7.1, and 3594.4 seconds in 1.8.1, on the same box. Basically, the code calls boot() to bootstrap fitting mixture

Hi All: I am clustering 500 genes using hclust of R. Visualizing cluster membership becomes difficult with so many genes in each cluster...Is there a way of printing the dendrogram in multiple pages so that I can clearly see what is in each cluster? Thanks in advance. Karthi.

[Not sure if such wishlist item should go to R-help or R-devel...] It would be nice if an option can be added to the R for Windows installer that will add the --internet2 option to the command line in the shortcut that gets created. Also, is it possible to make that an option that can be set at the R prompt, or perhaps even better, as the default no matter how/where R is started? For those of

[Not sure if such wishlist item should go to R-help or R-devel...] It would be nice if an option can be added to the R for Windows installer that will add the --internet2 option to the command line in the shortcut that gets created. Also, is it possible to make that an option that can be set at the R prompt, or perhaps even better, as the default no matter how/where R is started? For those of

Hi Nguyen, > Subject: [R] install "multtest" and "preprocessCore" packages in > Bioconductor library > Date: Wed, 30 Nov 2011 09:57:36 -0800 > From: UyenThao Nguyen <unguyen at tethysbio.com> > To: r-help <r-help at r-project.org> > CC: uth.nguyen at ucdavis.edu <uth.nguyen at ucdavis.edu> > > Hi All, > > I've tried to

Hi, I am running Samba 3.6.19 and making my way through all the Active Directory documentation. I have joined various Linux boxes to a Windows Server 2008 R2 Active Directory domain. Windows 7 users who log on with their domain accounts can mount the correct shares exported by the Linux boxes without having to supply any additional credentials. All working perfectly! However, I have a

Hello R experts, I am trying to analyze this dataset and am stuck on this problem for quite some time now. I am using mt.rawp2adjp. the output that came out was a matrix with two colums since I had asked it to calculate the adjusted p values using one method. so it has the two columns as: rawp BH I combined these using cbind with my actual dataframe. checked using head all was fine. thereafter I

Dear Devel-list member, by checking a small exemplatory package during the DSC2003 in Vienna I encountered the following error message (see attachment). Thomas Lumley has suggested to me posting the problem to this list. You help is appreciated. Cheers, Bernhard System: machine: i386 OS: Suse 8.1 R: 1.6.2 -------------- next part -------------- * checking for working latex ... OK * using log

As many of you have probably realized, the spam filtering at @stat.math.ethz.ch has been dead for since yesterday (09-25) ~16:50 till today ~08:30. The sudden death may have been caused by unrelated installation of some perl modules (spamassassin *is* running on perl) by our IT staff. We are very sorry for this event. On the bright side: You have been able to get a glimpse of what you are

I have moved the R-announce mailing list from the Majordomo software to a combination of procmail & mailman an hour or so ago. You find a link in the footer of this message giving an URL where you can modify your subscription, look at the archives (everything from the beginning in 1997) and more. CHANGE: Postings to R-announce are now moderated, ie. they have to be approved by a list

I have moved the R-announce mailing list from the Majordomo software to a combination of procmail & mailman an hour or so ago. You find a link in the footer of this message giving an URL where you can modify your subscription, look at the archives (everything from the beginning in 1997) and more. CHANGE: Postings to R-announce are now moderated, ie. they have to be approved by a list

Has anyone ported the Bagplot function by Rousseeuw, Ruts, and Tukey from S to R? The S function comprises a script and a FORTRAN function. I assume porting is relatively uncomplicated, but since I have not done any porting before I would not want to invest the effort if a port is readily available.

We have locally collected good experience the last few weeks using procmail-spam filtering, inclduing spamassassin to the procmail filters. The last two spams that went past the majordomo filters (the "traditional ones I've been using) through to R-devel both were not delivered to me, be but caught by the filters. I have now collected a bit more of a week experience using the new scheme

Dear R experts. 'D()' function recognizes some of the analitical functions, such as sin, cos, etc. But I'd like to take analytical derivatives from asin, atan etc. functions. Are there any R packages providing that features? Thanks. -- Timur.

Is there a simple possibility to become directly a matrix from a call of sub() on a matrix? --------- START OF LOGFILE ---------------- # R 1.4.1 > a <- matrix( letters[1:6], 2, 3 ) # a is a matrix > print( a ) [,1] [,2] [,3] [1,] "a" "c" "e" [2,] "b" "d" "f" > b <- sub( '(.)', '-\\1-', a )

Is there a way of extracting mean distance or dissimilarity for a given strata from a 'dist' or 'dissimilarity' object, e.g. extract mean distances for each species in Anderson's iris data? data(iris) iris.dist<-dist(iris[,1:4]) then what? Mikkel Grum, PhD Genetic Diversity Scientist International Plant Genetic Resources Institute (IPGRI) Sub-Saharan Africa Group ***