similar to: reading non-existent files

Dear all Just for fun, I have just downloaded the paper mentioned below and checked it with R-1.6.1. Everything is ok with exception of Table 2b, where I get always 1 instead of 0.5: > pbinom(1e15,2e15,0.5) [1] 1 Which value should be correct? Best regards Christian Stratowa ============================================== Christian Stratowa, PhD Boehringer Ingelheim Austria Dept NCE Lead

Hi, I have a problem executing "library(ROracle)" in R: OS/Software: Redhat 8.0, all available patches applied Oracle 9i v9.2.0.1.0 R v1.7.0 ROracle v0.5-0 DBI v0.1-5 The compilation and installation of ROracle went fine. However when I try to load ROracle I get the following: >> library(ROracle) >Error in dyn.load(x, as.logical(local), as.logical(now)) : > unable

Dear all I apologize for cross-posting, but first it is accepted custom to thank the repliers and give a summary, and second I have still the feeling that this problem might be a general statistical problem and not necessarily related to microarrays only, but I might be wrong. First, I want to thank Robert Gentleman, Mark Kimpel and Mark Reiners for their kind replies. Robert Gentleman kindly

> Dear expeRts, > > Currently, my colors are as follows: > mycol <- > c("blue1","blue2","blue3","blue4","black","yellow4","yellow3","yellow2","y > ellow1") > heatmap(snp, Rowv=NA, Colv=NA, col=mycol) > > However, I would like to have the following colors: > bright blue ->

Dear Spencer Thank you for this extensive explanation of the problem. I was just curious. Best regards Christian ============================================== Christian Stratowa, PhD Boehringer Ingelheim Austria Dept NCE Lead Discovery - Bioinformatics Dr. Boehringergasse 5-11 A-1121 Vienna, Austria Tel.: ++43-1-80105-2470 Fax: ++43-1-80105-2683 email: christian.stratowa at

Dear all, First I apologize for cross-posting, but I think that this could be of interest to BioC users, too. For DNA copy-number analysis I have downloaded PLASQ500K from: http://genome.dfci.harvard.edu/~tlaframb/PLASQ/ After creating sub-directories SND and STD containing 3 Sty Mapping arrays each, I tried to compute parent-specific copy number: > library(PLASQ500K) > psCN <-

Dear Ioannis Thank you very much for pointing me to meta-analysis. Although it may not solve my problem with the normalization, it gives me some other options to display the different correlation coefficients. One possibility is the use of Funnel plots, which are even available in library(rmeta). Another possibility is the use of forest-plots, as implemented in rmeta as metaplot. Sorrowly,

Dear R users, I have a problem computing time differences using R. I have a date that are given using the following format: 20080620.00, where the 4 first digits represent the year, the next 2 ones the month and the last 2 ones the day. I would need to compute time differences between two vectors of this given format. I tried around trying to change this format into any type of time serie

Dear All, I wonderif there is a simple way to draw a regression line in the xyplot: more specifically, let: age <- c(20:30, 31:40 ) age.cut <- cut(age, breaks = 2 ) y<- rnorm(20) x <- rnorm(20,4,1) xyplot(y ~ x| age.cut, xlab="x", ylab="y") How to draw (in the plot given by xyplot) the two regression lines (y ~ x) corresponding to the two category

Cd /xen/xen-unstable/linux/2.6.12-xen0/ Then: make ARCH=xen xconfig Thomas Diederich ************************************************** * Boehringer Ingelheim Pharma GmbH & Co.KG * A Informationsverarbeitung / Diplomant Systemtechnik * * Mail: diederit@ing.boehringer-Ingelheim.com * Phone: +49 (0)6132/77-98151 -----Ursprüngliche Nachricht----- Von:

Dear all, When running function 'testQAReport()', which uses function 'buildVignettes()' to create a pdf-file I get the following error: > source("testQAReport.R") > testQAReport() Error in .get_package_metadata(pkgdir) : Files 'DESCRIPTION' and 'DESCRIPTION.in' are missing. Since I did not get this error in earlier versions of R, could you

Dear R-user group I am currently running R-0.90.1-1 for LinuxPPC on my PowerBook. Few days ago I have seen at CRAN that a new R-package exists, namely R-base-with-hdf5-0.90.1-2. Sorrowly, I could not find any explanation, what the difference to the other package is. I have downloaded the "Introduction to HDF5 Release 1.2" from hdf.ncsa.uiuc.edu/HDF5. It seems that HDF5 is a data

Hi, Maybe this is a simple question: Using S-Plus, and having a matrix m with row- and col-names, I have the following problem: When I import into a function the one-column matrix m[,i], I am no longer able to get the column name. Is there a way to get the column-name? (Although attributes(m) displays row- and col-names, attributes(m[,i]) does no longer show the col-name.) Thank you for your

Hi, Maybe somebody could help me with my problem installing R on my PowerBook G3/292 with MkLinux DR3 installed on the internal HD: When installing R with rpm -Uhv R-base-0.63-3.ppc.rpm I got the following message: /var/tmp/rpm-tmp.47537: [: !=: unary operator expected /var/tmp/rpm-tmp.47537: /bin/R: no such file or directory execution of script failed error:

Hey. Is ist possible to guarantee CPU Performance to virtual machines? E.g.: I have a 4 CPU host machine. 3 guests are running. Each has 2 CPU. When VM1 needs more resscources than the other 2, can i guarantee that VM1 gets the most Power of the system at this time? Thomas Diederich ************************************************** * Boehringer Ingelheim Pharma GmbH & Co.KG * A

Does anyone know if Xen is currently supporting Itanium on 64 Bit!? Thomas Diederich ************************************************** * Boehringer Ingelheim Pharma GmbH & Co.KG * A Informationsverarbeitung / Diplomant Systemtechnik * * Mail: diederit@ing.boehringer-Ingelheim.com <mailto:diederit@ing.boehringer-Ingelheim.com> * Phone: +49 (0)6132/77-98151

Hey, just pulled the new updates from the repository, and did a male dist, make install and an ./install.sh Then i made an initrd an bootet the system. But when I do an lsmod, it shows me: NOTHING! What''s wrong there?! Thomas Diederich ************************************************** * Boehringer Ingelheim Pharma GmbH & Co.KG * A Informationsverarbeitung / Diplomant

I'm on R 2.1.0. In the "source" function there is a bug preventing the proper use of the chdir option (which simply doesn't work). The problem is that in the function the following line occurs: file <- file(file, "r", encoding = encoding) This overwrites the variable "file" and later causes the check if (chdir && is.character(file)

Hello, I have gone through the howto provided but I am not yet able to logon to my linux box using NT4 domain accounts. I can however authenticate to restricted shares and I can obtain groups and users via "getent" and "wbinfo -u". All I really need now is a working /etc/pam.d/login. I've tried examples from the howto as with others from the mailing list but I can not