similar to: compiling R with gcc 3.2 on Solaris

I am trying to compile R-devel (R-devel_2006-05-17.tar.gz) on Red Hat Enterprise Linux AS release 3 (Taroon Update 7) using the Portland Group compiler 6.0. (I have not yet successful compiled R on this configuration, so I don't know if this is a new problem.) I get an error pgcc -L/usr/local/pgi/linux86-64/6.0/libso -L/usr/lib64 -o dftables dftables.o ../dftables chartables.h

I'm having trouble making todays development snapshot: -DHAVE_CONFIG_H -g -O2 -c stirlerr.c -o stirlerr.o stirlerr.c:34: conflicting types for `Rf_stirlerr' ../../src/include/R_ext/Mathlib.h:557: previous declaration of `Rf_stirlerr' make[3]: *** [stirlerr.o] Error 1 [20] /home/mfa5/gilp/R-versions/R-devel : uname -a SunOS mfa99579 5.6 Generic_105181-11 sun4u sparc SUNW,Ultra-5_10

I installed R-2.3.1 and ran make check without problem, but I am having trouble installing several packages using gcc (GCC) 3.2.3 20030502 (Red Hat Linux 3.2.3-53) on Red Hat Enterprise Linux AS release 3 (Taroon Update 7) Kernel 2.4.21-40.ELsmp on an x86_64 Below are the messages from MCMCpack. Perhaps my systems are messed up? Paul Gilbert > install.packages("MCMCpack")

Hi not sure where to go with this, I'm attaching the whole output, you'll see the error at the end... > ./configure loading cache ./config.cache checking for a BSD compatible install... tools/install-sh -c checking whether build environment is sane... yes checking whether make sets ${MAKE}... yes checking for working aclocal... missing checking for working autoconf... missing checking

configure: WARNING: dlfcn.h: present but cannot be compiled configure: WARNING: dlfcn.h: check for missing prerequisite headers? configure: WARNING: dlfcn.h: see the Autoconf documentation configure: WARNING: dlfcn.h: section "Present But Cannot Be Compiled" configure: WARNING: dlfcn.h: proceeding with the preprocessor's result configure: WARNING: dlfcn.h: in the future, the

I have now tested R 1.3.1 compiled with GCC 3.0.2 on Solaris and the example I previously posted (repeated below) still gives a segmentation fault, as it does with GCC 3.0.1 but not with 2.95.2. The eigen calculation sometimes needs to be repeated several times before the segmentation fault occurs. La.eigen does not cause a problem. (The problem occurred with R-devel too, but I have not tested

I am trying to compile R-2.3.0 (both first release and patched 2006-05-10) on Red Hat Enterprise Linux AS release 3 (Taroon Update 7) using the Portland Group compiler version 6.1 and the notes from Jennifer Lai on p33 of "R Installation and Administration" version 2.3.0 (2006-04-24). I have not used this compiler before, so it is possible things are messed up more than usual, even

--Scraw_of_Flies_285_000 Content-Type: TEXT/plain; charset=us-ascii Content-MD5: eXeT31BJngKeovsqhTpOHg== Dear R-project, I am having difficulty compiling R for my unix machine. Attached is the config.log file that has all the necessary info. Can you help? Thank you. Mutlu.. ------------------------------- Mr. Mutlu Ozdogan Center for Remote Sensing Boston University 725 Commonwealth Avenue

Hi everyone, I met a erro on the HP-UX system when I compile with the R-2.15.2.tar.gz. the command and erro are shown as follows, I try many times hope anyone can help me. Thanks! $ cd R-2.15.2 $ bash ./configure --with-readline=no --with-x=no checking build system type... ia64-hp-hpux11.23 checking host system type... ia64-hp-hpux11.23 loading site script './config.site'

Hi everyone, I am having installation problems, but this is how it all started: I had some errors running the bioconductor package affyPLM that uses LAPACK/Blas > Pset <- fitPLM(Data) Background correcting PM Normalizing PM Fitting models /usr/local/lib/R/bin/exec/R: relocation error: /usr/local/lib/R/lib/libRlapack.so: undefined symbol: s_copy # thrown out of R .... I was using R

With R-rc_2010-10-11_r53297.tar.gz I am getting ... ** building package indices ... ** testing if installed package can be loaded Error in dyn.load(file, DLLpath = DLLpath, ...) : unable to load shared object '/home/mfa/gilp/toolchain/R/src/R-rc/library/cluster/libs/cluster.so': /home/mfa/gilp/toolchain/R/src/R-rc/library/cluster/libs/cluster.so: undefined symbol: cl_daisy_

I shouldn't try to do this on Monday morning. Can anyone suggest why the make for R 0.63 is failing for me under Solaris (SunOS 5.6). Paul Gilbert ... creating src/scripts/html2dos creating tests/Makefile creating tests/Examples/Makefile creating src/include/Platform.h R is now configured for sparc-sun-solaris2.6 Source directory: . Installation directory: /usr/local C

I have included the full configure/make output: (the particular error regarding bessel_i.c is at the END of the report). -walter tautz cd build/R-1.4.0 \ && unset noclobber \ && CPPFLAGS=" " \ LDFLAGS="" \ ./configure --prefix=/software/r-1 \ --datadir=/software/r-1/data \ --libdir=/software/r-1/lib \

Hello! I would first like to appologice if this question does not fit on this mailing-list. I am new to Linux and I tried to compile R on my Ubuntu Warty linux. I followed the instructions in "R Installation and Administration" manual. It seams that there was a problem with "configure", since when running "make" afterward gave me this reply: make: *** No

Dear All, we're trying to implement R on the IBM p690 cluster "Jump" at the research centre in J?lich, Germany (c.f. http://www.fz-juelich.de/nic/Supercomputer/computer-e.html) using the most recent version of R (2.1.0) and precisly following the installation instructions. After ./configure we get the final message: ---------------- R is now configured for powerpc-ibm-aix5.2.0.0

I got the following compile error in R-1.9.0 on NetBSD 1.5: <-- snip --> ... gcc -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -O2 -mcpu=v8 -c main.c -o main.o main.c: In function `setup_Rmainloop': main.c:463: `CODESET' undeclared (first use in this function)

Recently I reviewed my RPM spec files for DU 4.0, and noticed that I forgot to post some problems + patches: 1. ./configure fails to choose a PIC flag, I simply removed the AC_MSG_ERROR and it works. There is actually no PIC flag for DEC cc (with DU 4.0E) --- ./configure.in.alpha-patch Mon Aug 23 06:36:28 1999 +++ ./configure.in Sun Sep 12 17:38:27 1999 @@ -541,7 +541,9 @@

hi to all, im currently installing rrdtool-1.2.15 with my box CentOS 4.3 final ,before i installed rrdtools there 2 files suggested need to installed the FreeType 2 and libart_lgpl 2.3 everything is fine when installed two files but when i try to installed rrdtool when i issue command ./configure --prefix=/usr/local/rrdtool-1.2.15 this should the output ,any suggestion what's the problem

I have unzipped the R-2.5.0.tar.gz gzip -dc R-x.y.z.tar.gz | tar xvf - 2. then #./configure 3. ./configure checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu loading site script './config.site' loading build specific script './config.site' checking for pwd... /bin/pwd checking whether builddir is srcdir... yes checking for

I'm having trouble with make at the documentation. (R 0.63.2 on Solaris) Paul Gilbert ______ g77 -O2 -fPIC -c kmns.f -o kmns.o ld -G -o mva.so dblcen.o hclust.o kmns.o mkdir ../../../../library/mva/libs mkdir ../../../library/stepfun mkdir ../../../library/stepfun/R Building system startup profile You should `make docs' now ... make: Fatal error: Don't know how to make target