similar to: R INSTALL: problem related to LD_LIBRARY_PATH

I'm geting ready to compile and install R-1.5.1 (R-patched_2002-07-15.tar.gz) on Linux (Suse 8.0, 2 AMD proc., ATLAS libs installed). My current version is R.1.4.0 I'd like to get advice on two doubts: 1. Is it better that I remove my current /usr/lib/R directory? 2. Regarding ATLAS, the R-1.5.1 R-admin manual states : "This is currently not supported. The problem is that SIGINT

After configure, make and make check on a linux Suse 7.3 box, I run make dvi and make info with no problems but get a lot of garbage to my screen during make pdf. Is this normal? Is there a bug in this part of the installation? This is part of what I get on the screen: humboldt:/usr/local/R-patched # make pdf make[1]: Entering directory `/usr/local/R-patched/doc' make[2]: Entering

This change allows the run scripts of virt-v2v and libguestfs to be chained. --- run.in | 16 +++++++++++++--- 1 files changed, 13 insertions(+), 3 deletions(-) diff --git a/run.in b/run.in index 9388398..7cef715 100755 --- a/run.in +++ b/run.in @@ -37,9 +37,19 @@ b=@abs_builddir@ export TMPDIR="$b" # Set local environment relative to this script. -export

Using R-2.8.0 and R-2.8.1, I get behaviour like this: R version 2.8.0 (2008-10-20) Copyright (C) 2008 The R Foundation for Statistical Computing ISBN 3-900051-07-0 [....] > Sys.getenv("LD_LIBRARY_PATH") LD_LIBRARY_PATH

Here is the thing. All workstations in the network have the /etc/profile modified and set up to call a profile script in the network that sets up variables that we need here. Here $LD_LIBRARY_PATH and other variables get set, fixed, or modified to support our development process. The weird thing is that while in a TTY the $LD_LIBRARY_PATH is fine and retains its value. But if I log in to the gui

Overwriting LD_LIBRARY_PATH broke some tests when running with fakeroot. --- align/Makefile.am | 2 +- cat/Makefile.am | 2 +- clone/Makefile.am | 2 +- df/Makefile.am | 2 +- edit/Makefile.am | 2 +- fish/Makefile.am | 2 +- haskell/Makefile.am | 2 +- ocaml/Makefile.am |

Hi. Consider the following situation: Solaris 8, /usr/local has gcc 2.95, my home has gcc 3.4.3, my gcc is first on PATH, LD_LIBRARY_PATH is unset (everything is perfect since I always use -R). In fact, programs compiled with my gcc do not work if LD_LIBRARY_PATH is set to something which has /usr/local/lib before home/lib, because it overrides stored path (-R) and I got libgcc_s.so.1

Hi. Consider the following situation: Solaris 8, /usr/local has gcc 2.95, my home has gcc 3.4.3, my gcc is first on PATH, LD_LIBRARY_PATH is unset (everything is perfect since I always use -R). In fact, programs compiled with my gcc do not work if LD_LIBRARY_PATH is set to something which has /usr/local/lib before home/lib, because it overrides stored path (-R) and I got libgcc_s.so.1

Dear R-help, I am trying to use a package (not from CRAN) which includes two shared library (.so) files. The maintainer suggests inserting two lines in /usr/bin/R, LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:path-to-package/lib export LD_LIBRARY_PATH This works, but I felt more comfortable putting the first line in .Renviron or $R_HOME/etc/Renviron.site. However this doesn't seem to work, and I

Hello, I have a CentOS 5.5/64bit VM, where I only have sudo rights: afarber ALL=(ALL) NOPASSWD: ALL I'm trying to pass LD_LIBRARY_PATH through sudo to install DBD::Oracle ( https://rt.cpan.org/Ticket/Display.html?id=63678 ) and have tried using "sudo -E" and also changing these lines in the stock /etc/sudoers: Defaults !env_reset Defaults env_keep =

Hi all, Just noted this behavior in the past couple of days, where if R is started in a shell script such as: gnome-terminal [-e][-x] R or in ESS (version 5.2.12 with Emacs or XEmacs), the LD_LIBRARY_PATH environment variable is not properly appended to, resulting in the loss of the pre-start value. This is using R Version 2.2.1 Patched (2006-02-28 r37448) on FC4. I noted this when

Hi! I ran into a problem with programs exec:ed by print/acroread8 picking up Linux libraries and thus failed to run. This includes the print program in the print dialogue and the browser configured in edit/preferences/internet. The reason is that the acroread launch script sets LD_LIBRARY_PATH which is propagated to its childs. See this PR:

I've got a situation where I need to hook a dlopen() made by VDDK, a proprietary library, where it passes a relative name expecting to resolve to a copy of several libraries, including libstdc++.so, that it installs alongside itself, and fails to load if that resolves to the system libstdc++.so. The simplest solution of providing LD_LIBRARY_PATH is enough to load VDDK, but then poisons

Hello, I'm trying to get the LD_LIBRARY_PATH set from .bash_profile (Centos 5.3 fully updated). This is a part of my .bash_profile: export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/home/szyman/omnet/omnetpp-2.3p1/lib export R_HISTSIZE=2000000000 Everything works fine under standard ssh login, but under NX client the LD_LIBRARY_PATH variable is missing (the R_HISTSIZE is exported properly). Any

On Fri, Feb 21, 2020 at 01:19:34PM +0100, Florian Weimer wrote: > I think what confuses me is that keep talking about a single binary, but > clearly there is this separate vddk DSO, and there is talk of plugins. > So it seems to me that multiple files are involved already? nbdkit is a standalone binary that happens to be able to load plugins from a well-known path, eg

I am writing an R package to interface to hdf5 files (yes I know one exists, the issue will be demonstrated using that package). I tend to like to build/install things locally so that aspects of the system I am working on don't cause problems later when attempting to install elsewhere. To this end, I build and install the hdf5 libraries w/out incident: tar xzf hdf5-1.8.4.tar.bz2 cd hdf5-1.8.4

On Thu, 19 Jul 2007, Reid Spencer wrote: > With the pending reorganization of the software, I have some questions > about how developers set their PATH and LD_LIBRARY_PATH variables when > working with LLVM. This is a bit long winded, but bear with me. ok :) > We're planning to break the "llvm" module up into three modules: > > * support - lib/Support,

Hi, i am getting an issue with rtorrent that is related to my curl libaries. In summary it requires a later curl libary than CentOS 5.4 uses for its system files (CentOS uses curl libs version 7.15.5, rtorrent requires 7.19.2 or greater). To get around this I would like to download the latest curl version and compile and link to rtorrent without affecting system files. How can i statically

On Fri, Feb 21, 2020 at 04:00:30PM +0100, Florian Weimer wrote: > * Richard W. M. Jones: > > > On Fri, Feb 21, 2020 at 01:19:34PM +0100, Florian Weimer wrote: > >> I think what confuses me is that keep talking about a single binary, but > >> clearly there is this separate vddk DSO, and there is talk of plugins. > >> So it seems to me that multiple files are

I would like to fit a model of the type Y = Xf + e where f are cover fractions (or percent cover). Therefore, I must constrain the fit to 1. sum(f) = 1 2. 0<= f <=1 How can I introduce these 2 constraints in a ML fit? Currently, I'm using nlregb and I'm using the "upper and low" keywords to set the bounds and use the following to ensure that sum(f) = 1: let's say