similar to: cluster compile fails

Regarding Tengfei Yin's post about an error trying to install "cluster" in 2.13.0, I have gotten an error with this package when trying to install the released version of 2.12.0. Here is the output on an Ubuntu Linux system: begin installing recommended package cluster * installing *source* package 'cluster' ... ** libs make[3]: Entering directory

I had installed R from source on Fedora Core 3. Then I upgraded to Fedora Core 4, but left R alone. R worked fine, until I trued to update.packages(). Even then, many packages updated just fine, but two of them, cluster and mgcv, failed with the following error message (using cluster as an example): gcc -shared -L/usr/local/lib -o cluster.so clara.o daisy.o dysta.o fanny.o meet.o mona.o pam.o

Please cc me when replying to the list. With Version 2.1.1 (2005-06-20) on Power Mac G5 running Mac OS X 10.4.2 (8C46): Some compilations work (e.g., MatchIt, RGraphics, Zelig), and some don't, e.g., mgcv, spatstat, and the following (Matrix, cluster): trying URL 'http://www.ibiblio.org/pub/languages/R/CRAN/src/contrib/ Matrix_0.98-3.tar.gz' Content type

Hello, I'm using R 1.40 on MacOS X X.1.2 (installed via the fink package manager). To upgrade my installed packages, I tried to use update.packages() today. All went well for most packages, with the exception of KernSmooth and cluster. In both cases, libraries were not found although I think they are present. Here's what happened: ---------------------------------- >

Doing the normal build process [1] for a first time with a R 2.0.0 snapshot -- the Sep 21 version I uploaded to Debian's 'experimental' section two days ago, ended in failure. The package in question is cluster 1.9.6 which should be 2.0.0-ready. The (partial) log follows: ----------------------------------------------------------------------------- [...] g77 -mieee-fp -fPIC -g -O2

Hi dear all It's the first time for me to install a developmental version of R, I came across following errors, my system is DISTRIB_ID=Ubuntu DISTRIB_RELEASE=10.04 DISTRIB_CODENAME=lucid DISTRIB_DESCRIPTION="Ubuntu 10.04.1 LTS" I downloaded the dev version of R in cran R source, and downloaded the recommended packages by using wget as described in R manual, and run

Hi (and Merry Christmas), I am trying to compile R on an AIX IBM machine using the native C and FORTRAN compilers... and everything goes smoothly (congratulations for the configure and make files, this is very nice)... until the pacakge 'cluster' (see dump below).... Any hint ? Laurent 1501-510 Compilation successful for file pam.f. cc -I/data1/laurent/R-1.6.1/include

I am trying to compile R 1.6.1 with gcc 3.2 on Solaris (Sun OS 5.8) and configure gives me: checking whether g77 and gcc agree on int and double... configure: WARNING: g77 and gcc disagree on int and double configure: error: Maybe change CFLAGS or FFLAGS? Complete output from configure is below. I am not setting CFLAGS or FFLAGS, but can someone suggest what I should set them to (or is this some

I'm having trouble with make at the documentation. (R 0.63.2 on Solaris) Paul Gilbert ______ g77 -O2 -fPIC -c kmns.f -o kmns.o ld -G -o mva.so dblcen.o hclust.o kmns.o mkdir ../../../../library/mva/libs mkdir ../../../library/stepfun mkdir ../../../library/stepfun/R Building system startup profile You should `make docs' now ... make: Fatal error: Don't know how to make target

I'm having trouble making todays development snapshot: -DHAVE_CONFIG_H -g -O2 -c stirlerr.c -o stirlerr.o stirlerr.c:34: conflicting types for `Rf_stirlerr' ../../src/include/R_ext/Mathlib.h:557: previous declaration of `Rf_stirlerr' make[3]: *** [stirlerr.o] Error 1 [20] /home/mfa5/gilp/R-versions/R-devel : uname -a SunOS mfa99579 5.6 Generic_105181-11 sun4u sparc SUNW,Ultra-5_10

Dear all yesterday I got around to install R-1.5.1 on my machine at home which, admittedly, is running a very old version of RedHat Linux. I noticed two things: 1) My pdflatex version is too old to produce the pdf version of the manuals. `./configure' checks whether a recent version of makeinfo is installed and tells you whether you can produce the info version or not. (I was told I

I have now tested R 1.3.1 compiled with GCC 3.0.2 on Solaris and the example I previously posted (repeated below) still gives a segmentation fault, as it does with GCC 3.0.1 but not with 2.95.2. The eigen calculation sometimes needs to be repeated several times before the segmentation fault occurs. La.eigen does not cause a problem. (The problem occurred with R-devel too, but I have not tested

I'm just trying to install 62.1 under Solaris. Making the program reports no errors, but when I try to run R I get ld.so.1: /home/res8/gilp/R-versions/R-0.62.1/bin/R.binary: fatal: libF77.so.2: can't open file: errno=2 Is there any standard place where I should be looking to find libF77? When make moves on to building the documents I get the errors below. (Is this because configure did

I shouldn't try to do this on Monday morning. Can anyone suggest why the make for R 0.63 is failing for me under Solaris (SunOS 5.6). Paul Gilbert ... creating src/scripts/html2dos creating tests/Makefile creating tests/Examples/Makefile creating src/include/Platform.h R is now configured for sparc-sun-solaris2.6 Source directory: . Installation directory: /usr/local C

Just for the fun of it (actually in order to test some Fortran more extensively), I've compiled and installed g77, yesterday on our Solaris 2.5.1 machines. After doing (in R's toplevel directory) make distclean ./configure now chooses g77 (instead of Sun's f77 which was chosen before). I now do make make check cd tests/Examples and carefully compare base-Ex.Rout to an

Recent sensible changes to the dynload mechanism have made an old problem resurface: how should we deal with packages which contain Fortran code and may need to be linked against additional libraries such as -lf2c? The current consensus is that extra Fortran libraries maybe needed are handled via the make variable FLIBS, and that `-lf2c' or `-lg2c' are added by default if g77 is used.

Hi I have a problem using the package cluster on my binary data. I want to try mona at first. But i get the an error. hc<-read.table("all.txt", header=TRUE, sep="\t", row.names=1) srt(hc) `data.frame': 51 obs. of 59 variables: $ G1p : int 2 1 1 1 1 1 1 1 1 1 ... $ G1q : int 1 1 1 1 1 1 1 1 1 1 ... $ G2p : int 1 1 1 1 1 1 1 1 1 1 ... $ G2q : int 1 1 1 1 1 1

Dear All, I am attempting to use the FANNY fuzzy clustering function in R (Kaufman & Rousseeuw, 1990), found in the "cluster" package. I have run into a variety of difficulties; the two most crucial difficulties are enumerated below. 1. Where is the 'm' parameter in FANNY? In _Finding Groups in Data: An Introduction to Cluster Analysis_ (1990) by Kaufman & Rousseeuw,

Hi! I am trying to calculate a dissimilarity matrix using daisy. The matrix vectver is binary as i test with: > levels(as.factor(vectver)) [1] "0" "1" But the call to daisy gives me the following error message.: > dfl1 <- daisy(vectver, type = list(asymm = c(1:length(vectver[,1])))) Error in daisy(vectver, type = list(asymm = c(1:length(vectver[, 1])))) : at least

For an analysis of data from twins, I'd like to do some rearranging in my dataframe. Currently, each twin has his or her own row. I'd like to add several columns of the co-twin's data to each row. In other words, this is the current situation: FamilyID ParticipantID IQ Digit_span 1 1 95 6 1 2 93 7 2 3 102 8 2