similar to: Re: coding factor replicates

> -----Original Message----- > From: Douglas Bates [mailto:bates at stat.wisc.edu] > Sent: Thursday, January 24, 2002 8:55 AM > To: Uwe Ligges > Cc: Brad Buchsbaum; r-help at stat.math.ethz.ch > Subject: Re: [R] Re: coding factor replicates > > Douglas Bates <bates at cs.wisc.edu> writes: > > > Uwe Ligges <ligges at statistik.uni-dortmund.de>

Hi, I have an S4 class that inherits from "array" but does not add generic implementations of the "[" method. A simplified example is: setClass("fooarray", contains="array") If I create a "fooarray" object and subset it with a one-dimensional index vector, the return value is of class "fooarray". Other variants (see below), however,

Hi, I'd like to plot 4 groups of data using xyplot and panel.superpose so that the points are overlayed on a single plot. For each group of data I'd also like a loess smoothed function (using panel.loess). I have tried the following: xyplot(series ~ time | gr, data=etable, panel = function(x,y, ...) { panel.superpose(x,y, ...) panel.loess(x,y,span=.15)

Hi, Suppose I have a multidimensional array: tmp <- array(1:8, c(2,2,2)) is there a function out there that, given a one-dimensional array index, will return the separate indices for each array dimension? for instance, tmp[8] is equivalent to tmp[2,2,2]. I'd like to derive the vector (2,2,2) from the index 8. thanks, Brad Buchsbaum

Hi, I am working on writing some S4 classes that represent multidimensional (brain) image data. I would like these classes to support standard array indexing. I have been studying the Matrix and EBImage (http://www.bioconductor.org/packages/1.9/bioc/html/EBImage.html) packages to see how this is done. When using objects of the "array" class directly, R distinguishes between the calls:

Good day, I need to subset a data by removing several rows. I know the %in% operator, i.e. sub <- mydata[group %in% c("A","B","E","G"), ] What I need is the opposite, that is remove rows and/or columns. What is the operator for "NOT IN"? I tried (i)! %in% and (ii) ^%in% and both resulted in a "could not find function" error.

Hi, I am using the scan function to read from a file. In general the syntax I am using is as follows: scan("myfile", list(a = "", b="", c="", d=""), sep=",") The file I am trying to read contains a #< in the 'd' field. When the file is read into an object, the d field comes as "" for that particular string. I

For various reasons, it suits our workplace to have a cygwin version of R. I am pretty sure that cygwin is still not a supported environment for R, but we have managed to compile R-2.5.1 under cygwin without too many dramas. Our procedure is described below. We still have a few problems compiling libraries without manually changing files from .so to .dll, but it seems ok. I was wondering

Dear R-users, is there a way to label the tickmarks other than persp does it? I didn't find anything on that in the archive. To plot the surface with equi-distant tickmarks, I assigned x<-c(1:6) y<-x persp(x,y,z,....) Instead of labels 1 to 6, I need something like 0.05, 0.1,10,15,100,1000. Any hint and help appreciated, Nina

To whom it may concern, I try to simulate a non-normal multivariate distribution. The MASS package allows by mean of "mvrnorm" command to perform a multivariate normal simulation. Is there an equivalent command for an arbitrary multivariate distribution available in the R-language? Thank you in advance. Bernard Colin Colin Bernard Professeur titulaire D?partement de Math?matiques et

Hi :) Was just wondering whether someone could help me with adjustments to trellis plots (parallel). I've got two way multivariate data. I want to make parallel plots for one of the factors, and want to color the lines according to the other factor. The first thing I manage, but with the other I'm lost :( Can only change the overall color. This is basically how far I get:

Wayne, I have this bug in redhat bugzilla: https://bugzilla.redhat.com/show_bug.cgi?id=439074 Summary: rsync 3.0.1pre -H fails assertion Is it ok to pass this kind of bug directly upstream filing a new bug in bugzilla and linking the fedora bug ? (There is also a reproducer there) Simo. -- Simo Sorce * Red Hat, Inc * New York

rsyncing a tree of perhaps 30M files, getting this: rsync: hlink.c:126: match_gnums: Assertion `gnum >= hlink_flist->ndx_start' failed. then a bit more output and

Hi all, I'm trying to test a repeated measures model with random effects using the nlme library. Suppose I have two within subjects factors A, B both with two levels. Using aov I can do: aov.1 <- aov(y ~ A*B + Error(S/(A+B)) following Pinheiro and Bates I can acheive the analagous mixed-effects model with: lme.1 <- lme(y~A*B, random=pdBlocked(list(pdIdent(~1),pdIdent(~A-1),

Hi, I'm hoping to use the SVG graphics device for exporting R plots to a java application. It works well for most basic plots from the "plot" command, but does not do so well with xyplot from the lattice package. Something like: xyplot(y ~ x | f) should demonstrate the problem. thanks, Brad Buchsbaum

Hi. I am one of the developers of Swish-e (http://swish-e.org/), an indexing/search tool similar to Xapian. I am currently researching future development directions for the Swish-e project. Three of our most often-requested features are UTF-8 support, incremental indexing, and large (multimillion) doc sets, all of which seem to be ably handled in the Xapian library. So one possible

Early[0] implementations of Swish3 for Perl are now available on CPAN. http://search.cpan.org/dist/SWISH-Prog-KSx/ http://search.cpan.org/dist/SWISH-Prog-Xapian/ These Perl implementations offer KinoSearch[1] or Xapian[2] as alternate backend libraries. SWISH::Prog::Xapian should build indexes compatible with the swish_xapian tool that comes with libswish3. Feedback welcome. [0] They are

Hi, I've been trying to use several plotting routings that make use of S's par("uin"), the number of user units per inch. For the moment I've substituted all of the occurences of this with par.uin _ function() (par("fin") / c( diff(par("xaxp")[1:2]),diff(par("yaxp")[1:2]))) This seems to work fine for my needs. -Greg

Hi, http://dev.rubyonrails.org/ticket/8453 http://dev.rubyonrails.org/ticket/8371 http://cve.mitre.org/cgi-bin/cvename.cgi?name=CVE-2007-3227 I came across the above by accident. While I am subscribed to the so called rails security list where supposed announcement of security issues were to be posted, neither of the above problem made the list. While I use rails a lot and like it, the above

I have been able to install Starcraft and Swish 2.0 using wine (under Mandrake 8.0) but when I try to run either program I get a "can't load *.dll" error. Both errors are from dll files that the are in the program directory itself. I have attempted to specify these dlls like all of the default dlls in the wine config file but it still can't find them. Anyone know if I have