similar to: New RH7.2 rpms for R-hdf5 support available

Dear everybody: HDF5, a dataset formatting library, and R that is built with it, have been uploaded to ftp://ftp-fis.iarc.fr/pub/incoming. The R RPM uses the spec file created by Martyn Plummer as a starting point, and makes only a few trivial changes. -rw-rw-r-- 1 ftp 100 3416612 Oct 6 17:45 R-base-with-hdf5-0.65.1-1.i386.rpm -rw-rw-r-- 1 ftp 100 2300453 Oct 6 17:48

Greetings I'm new to R. I became interested in it because my friends at the Swarm Development Team at the Santa Fe Institute have been using/developing R to work as a front end for HDF5 datasets. >From looking at the RPMS for R, I got the idea they were compiled without support for HDF5. Correct? If you are interested in the HDF5 data format and R, on my page I have RPMS for HDF5 and

I am trying to build hdf5 for ms-windows. I downloaded the hdf5_1.4.7.tar.gz, gunzipped it and got a tar file. I extracted everything into a directory tree called hdf5. I also found a Makevars.win and libhdf5.def in the R help archives from March 2002. I put those two in hdf5 as well. I issued the command Rcmd build --binary hdf5 but got this message complaining it can''t find

Running R 1.1 on RedHat Linux 6.2. I need to write a shell script that goes through a bunch of directories of simulation output, creating summary files that have the mean and standard deviation of the variables found in the data files in each directory. I've got the R code doing almost the right thing. It reads in data, then gets the mean and standard deviation for the numeric variables,

Using RedHat Linux 7.0, R-1.2.2, R-hdf5-1.2 library, I want to load a dataset, do some stuff with it, then erase its objects, get an other, repeat. My friend wrote a function which tried to clear away all the objects. At the end, it uses rm() to remove objects. This is the same way we do it interactively, from the R prompt: testLoadSeveralHDF <- function(numFiles) { for (i in

Dear R-user group I am currently running R-0.90.1-1 for LinuxPPC on my PowerBook. Few days ago I have seen at CRAN that a new R-package exists, namely R-base-with-hdf5-0.90.1-2. Sorrowly, I could not find any explanation, what the difference to the other package is. I have downloaded the "Introduction to HDF5 Release 1.2" from hdf.ncsa.uiuc.edu/HDF5. It seems that HDF5 is a data

I'm trying to build an RPM for R 65 that has support for the hdf5 data format. In the past this was easy because I used the SPEC file from your SRPM. Now in the CRAN sites I find no RPM for 0.65.0 and there is some monkey business with a patch for LIBINDEX that I can't seem to get straight in my effort to graft the 0.64.0 spec file onto the 0.65.0 release of R. I was able to edit the

Hello: I've recently started using R to process data in HDF5 format. My files come in 1.5MB chunks, but they can be as big as 50MB. The problem I am facing with R-1.2.2 is that when I try to load 50 of the 1.5MB HDF5 files (using the hdf5 library) in a loop, my Linux box gets close to its memory limit around the file #15 (256MB RAM and 256MB swap). This happens even if I load file ->

Hi there, I am currently working on something that uses hdf5 library. I think hdf5 is a great data format, I've used it somewhat extensively in python via PyTables. I was looking for something similar to that in R. The closest I can get is this library: hdf5. While it does not work the same way as PyTables did, but it's good enough to let them exchange data via hdf5 file. There is just 1

I'm working up a set of small working examples in R to show what various distributions are and the beauty of the central limit theorem. Those example programs are in this directory: http://lark.cc.ukans.edu/~pauljohn/R/ExampleCode/ You can feel free to use those if you want, or you can send me other small working example code for R. The key here is small, self contained things that

I've used the HDF5 library to bring some data into R. THe verbose output looks like this: > hdf5load("hdfGraphWed_Mar_16_13_33_37_2005.hdf",load=T,verbosity=1,tidy=T) Processing object: cprSeats ...... which is a Group Processing object: Seats 0 ...... its a dataset......Finished dataset Processing object: Seats 1 ...... its a dataset......Finished dataset Processing object:

Hi all, I try to use the hdf5 package. I downloaded the Windows binary version, and it claims it requires hdf5dll.dll library, so I download the whole hdf5 1.4.3 package from NCSA. Unfortunatelly, it crashes R. I suspect it is because the package was probably compiled against version 1.2 of hdf5 (as evoked in the help file?) or any other previous version, so I downloaded the source of the package

The basic question is: How can I pass configure script command line flags from the R CMD command? Now I try to install the HDF5 package on Linux (SuSE 7.3). I got hdf5 libraries installed in /usr/local/hdf5 (man/lib/bin). I understood to install packages the following way: as root# R CMD INSTALL hdf5_1.4.7.tar.gz Installing source package `hdf5' ... checking for gcc... gcc checking for

Dear Friends in R: On RedHat linux, R-1.1, I've gotten far enough to create the graph that shows on the screen with 3 lines, but I have some trouble. Here is the way I created the three "overlaid" graphs: data<-read.table("DataCulture0",header=T,as.is = TRUE) attach(data) tmp1<-plot(acquaint~T,type='l', ylim=c(0,1),ylab="average

I have made a plot with a legend and on the screen it looks fine, but when I save as jpg or pdf, or print, the legend box is too small, it cuts through the words on the right side. I put an example here: http://lark.cc.ukans.edu/~pauljohn/R/apdftest.pdf Is there a work around? -- Paul E. Johnson email: pauljohn at ukans.edu Dept. of Political Science

I'm getting some abuse for asking about R-Gnome and I don't think it is fair. I did not create that project, I was just asking how it was going and whether that other project would help out. Now I'm getting some email that says some of you don't want a GUI interface because you think interfaces like that are inconvenient. OK. I agree, in most cases. I think GUIs for model

You may want to take a look at a paper by Julia Kelsall and Scott Zeger in JRSS(C) - 1999, pp. 331-344. This paper describes a frequency domain approach to log-linear regression modeling of poisson-distributed count data, accounting for correlation and over-dispersion. There are also some S functions available to implement the methodology. Ravi. -----Original Message----- From: pauljohn at

Hi Everyone, I have updated my R version from 2.7 to 2.8 (patch) and since then I can not open HDF5 files that I saved previously with the command hdf5save from the hdf5 library. As anyone had that problem yet? Any help would be appreciated. Thanks Emmanuel ------------------------------------------- Dr. Emmanuel Devred Bedford Institute of Oceanography, 1 Challenger Drive, Dartmouth, Nova

I've installed hdf5 [library & includes] here locally, last week. [see ?hdf5save in R] There is a remaining compilation / linking problem for me: The hdf5 library uses "compress2" a routine defined in Gnu's zlib, but not available in the zlib that comes with X11R6.3 (which we have installed). Now unfortunately, the final link statement for R (0.65) [for me, with hdf5

The question puzzled me at first, because of your use of "library". It looks as if the hdf5 r "package" utilises the "windows hdf5 library" binary. My reading is that you will have to compile the package yourself after you have downloaded the hdf windows dll from hdf.ncsa.uiuc.edu The instructions are in win.readme.txt of the package source which you can download at