similar to: the R package - relation to R project?

Please could you help me to find a package to apply a depth-constrained cluster analysis on palaeoecological data (in order to zone subfossil diagram)? Thanks, Dr. Emmanuel GANDOUIN Université d'Aix-Marseille 3 Institut Méditerranéen d'Ecologie et de Paléoécologie UMR CNRS 6116 Europôle Méditerranéen de l'Arbois, Bat. Villemin, BP 80 13545 Aix-en-Provence cedex 4 04 42 90 84 40

Dear R-Help Does "The R Package for Multivariate and Spatial Analysis Version 4.0 (Casgrain and Legendre, 2001)" exist on CRAN and under what name? It supposedly has a chronological clustering program ,CHRONO, that I would like to use. Alternatively, I would ask if there is a R based program that performs chronological clustering? Thanks Alex Alex Hanke Department of Fisheries and

Hello, I found an interesting program on Pierre Legendre's webpage: http://www.bio.umontreal.ca/casgrain/en/labo/corr_permute.html With this program one can compute a "Pearson correlation coefficient matrix with permutation test". This is exactly what I need as an R-package because so far I have only analyzed my data with the function cor(). However, I need additional

I got a shock a few days ago when I accidentally visited www.r-project.com . I thought that the r-project site had been hacked until I realised my mistake. There is also a site www.r-project.net. Both of these sites appear to be Japanese. Does anyone know anything about them? I suppose that it is not unusual for names close to those of popular sites to be used. It is good that they use a

Hi I'd like to know if the R can do the DCCA? Because I can't find the package about the DCCA in R. If it can not, please introduce a free software to me, which you think can easily do the work , thanks! jeff

Hi, I'm trying to find out what threshold of indicator value in labadsv should be used to accept a specie as an indicator one? So far I assumed that indval=0.5 is high enough to avoid any mistakes but it was based only in my intuition. I'd be greatful for any advise best regards Agnieszka

Hola a todos, Por casualidad alguno que tenga el libro de Legendre de Numerical Ecology with R sabe dónde o cómo bajar los data sets que se mencionan para seguir los ejemplos? Muchas gracias por su ayuda! ---- *Angela Andrea Camargo Sanabria* Estudiante Doctorado en Ciencias Biológicas Laboratorio de Ecología de poblaciones y comunidades tropicales Centro de Investigaciones en Ecosistemas

Hi, I have submitted a package to CRAN in ftp://ftp.tuwien.ac.at/incoming/pastecs_1.0.tar.gz. The R extension manual advises to send a mail to cran at ci.tuwien.ac.at about it, but it fails. I have also tried WWWadmin at ci.tuwien.ac.at. Are these email adresses still valid? Best, Philippe Grosjean ...........]<(({?<...............<?}))><............................... ) ) ) )

I am trying to find the percentage of the parameters explaining the bacterial community composition. I have one data matrix with relative abundance of OTUs and one with environmental parameters. I used varpart in vegan package but the values in the venn diagram is bigger than 100% in total.How is it possible? What might be the reason? Thank you library(vegan) gotud <-

Hi all, I have a bit of a newbie question here that I hope y'all can help with. I've run a cluster analysis using hclust on about 500 objects (using R1.3 under Win 2000). The problem is that the tips of the dendrogram are so close together on the plot that the labels overlap and are unreadable. I've used "cex" to reduce the label sizes but this isn't sufficient with so

Hello all, Since I got no answer to my first mail, I suspect I did not formulate my question adequately, so I try again. In R, one can debug or trace a function 'foo' with debug(foo) or trace(foo), respectively. This leads to a special treatment of the function 'foo' until one enter undebug(foo) or untrace(foo). I would like to know if there is a convenient way to know at any

Hi, Under Windows, I am exporting graphs from R (in metafile -emf- format), and want to combine them using a graphic package. It happens that the background of the graph is represented by a filled rectangle (with the color given by bg=...). This is to be expected. However, I find no options to disable this and produce a graph with transparent background. Does such an option exist? If not, then

Hi, I make a glm analysis with binomial errors and its OK. Now I need plot the ajusted logist line in my points. How do I make it? | * * * * -> I need plot an ajusted | * * line in this points. | * * | * | * * | * * |* * * * |_________________________ Exist an abline like function for ajust others formulas? Exist in R

Dear R and S users, I've been working on fitting finite mixture of negative exponential distributions using maximum likelihood based on the example given in MASS. So far I had much success in fitting two components. The problem started when I tried to extend the procedure to fit three components. More specifically, likelihood = sum( ln(c1*exp(-x/lambda1)/lambda1 + c2*exp(-x/lambda2)/lambda2

-----BEGIN PGP SIGNED MESSAGE----- Hash: SHA1 Is it possible to create a time series from existing data frame? One column of that frame contains dates (like "01/01/01") and the second one the values. The period is non-regular (it is not strictly daily nor working-days-daily). Thank you. lukas - -- Lukas Kubin lukas.kubin at permonik.com phone: 00420603836180 -----BEGIN PGP

Hi, I need help regarding estimating a linear model where restrictions are imposed on the coefficients. An example is as follows: Y_{t+2}=a1Y_{t+1} + a2 Y_t + b x_t + e_t restriction a1+ a2 =1 Is there a function or a package that can estimate the coefficient of a model like this? I want to estimate the coefficients rather than test them. Thank you for your help Ahmad Abu Hammour --------------

Colleagues ---------------------------------- System info: Version 1.2.3 (2001-04-26) on NT ESS v. 5.1.18 using emacs ver. 20.4 ---------------------------------- I am wondering if there is a problem with the function rep(). Both the commands using rep() below were expected to produce 8 twos, but only the second did. x <- rep(2,40*(1-0.8)) length(x) y <- rep(2,40*0.2) length(y)

Hi, Is there a simple command to pause a script until the user hits return? Alternatively, is there a command which prompts the user for some input and assigns the input into a variable? dave +-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+ |David Richmond It works on a | + Dept. of Sociology complex scientific + |Saint Mary's College

Hi, I'd like to perform Dufrene-Legendre Indicator Species Analysis for a multivariate regression tree. However I have problems with arguments of duleg(veg,class,numitr=1000)function. How to obtain a vector of numeric class memberships for samples, or a classification object returned from mvpart? thanks in advance -- Best regards, Agnieszka Strzelczak

Full_Name: Pierre Legendre Version: 2.1.1 OS: Mac OSX 10.4.3 Submission from: (NULL) (132.204.120.81) I am reporting the mis-behaviour of the function 'eigen' in 'base', for the following input matrix: A <- matrix(c(2,3,4,-1,3,1,1,-2,0),3,3) eigen(A) I obtain the following results, which are incorrect for eigenvalues and eigenvectors 2 and 3 (incorrect imaginary portions):