Displaying 20 results from an estimated 600 matches similar to: "Lapack or Blas crashing R when using "large" matrices (Ubuntu 11.04)"
2011 Jun 04
1
R Crashes when using "large" matrices (Ubuntu 11.04)
Sorry for re-posting, but the original one ended up inside a previous and unrelated thread. -- Matias
-----
Hello,
This simple SVD calculation (commands are copied
immediately below) crashes on my Ubuntu machine (R 2.13.0). However it
works fine on my Windows 7 machine, so I suspect there's a problem with
(my?) Ubuntu and / or R. Can anybody else reproduce it (with Ubuntu
11.04)? Thanks
2013 Apr 11
1
La_svd compiler error
Dear All,
I have been trying to compile a package for windows that we have written. Since R version 3.0.0 the package doesn't compile any more. (On Linux the package compiles without errors).
The error specifically says:
gcc -m32 -I"C:/PROGRA~1/R/R-30~1.0/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O3 -Wall -std=gnu99 -mtune=core2 -c
2011 Jun 03
2
Arules: R Crashes when running eclat with tidLists=TRUE
Hello,
I'm using the eclat function of the arules package (1.0-6) for the
identification of frequent itemsets. I need the tidLists, but if I set
in the function tidLists=TRUE R crashes (Windows XP Professional SP3,
32 bit, R version 2.12.1 (2010-12-16), reproducible on two different
computers) with two different error messages or non at all. Minimum
examples are:
library(arules)
2011 Feb 26
2
GotoBLAS2 breaks lapack
Hi,
I'm relatively new to R on Ubuntu (moving from Windows), and I'm trying to
get GotoBLAS2 working. I installed (from a CRAN mirror) the pre-built
binaries of R (which, as far as I know, is compiled as a shared library) on
Ubuntu 10.10 using
apt-get install r-base r-base-dev
I successfully built GotoBLAS2 from source, copied the library to /usr/lib
and created s symbolic link from
2012 May 09
2
GotoBLAS2 breaks lapack
Dirk Eddelbuettel <edd <at> debian.org> writes:
> One last follow-up. Debian's Atlas maintainer has started to work in the
> OpenGoto packaging. There will be proper Goto packages now that the license
> is better, but it may take a while. It took years to get Atlas packaged
> 'right' so don;t expect anything too soon. The gotoblas2-helper package is
>
2010 Jun 07
1
Compiling R-2.11.1 patched on Ubuntu 10.04 with Optimized GotoBLAS2 libraries
I've attempted to use the optimized GotoBLAS2 library with a freshly
compiled R-2.11.1 patched on 64-bit Ubuntu 10.4. (See details below).
When I run this version of R, the timings are not different than the
original install, and only one core is used in test computations.
Can someone point out my error? Thanks. --Dale
Details ...
I'm running the 64-bit version of Ubuntu 10.04 on my 2
2010 Dec 06
1
R with ATLAS avoids Linux cpu affinity
Hi all,
I have a problem with cpu affinity in my R-2.11.1 installation compiled against ATLAS running on a Linux (Ubuntu 10.04) cluster under GridEngine. I wish to use Grid Engine's core binding feature to bind user processes into the number of cores they request on the cluster, thus preventing badly behaved multi-threaded libraries from consuming more cores than requested. An example of
2010 Dec 04
1
SurviveGotoBLAS2 for Win64 (human sacrifice release)
Hi,
I put below Rblas.dll(GotoBLAS2 for Win64).
http://prs.ism.ac.jp/~nakama/SurviveGotoBLAS2/binary/windows/x64/Rblas.dll
It's a tryal phase.
--
EI-JI Nakama? <nakama (a) ki.rim.or.jp>
"\u4e2d\u9593\u6804\u6cbb"? <nakama (a) ki.rim.or.jp>
2010 Aug 19
1
Can you share a working example of R program aided by fast BLAS?
Can one of you give me an R program that displays the benefits an
accelerated BLAS in R?
Here's why I ask, in case you wonder:
In a linux cluster, I've hit some bumps in the road. The worst one by
far was that I installed R, then GotoBLAS2 with default settings, and
after that, jobs using Rmpi were *really* *really* slow. I mean
horrible. If a job took 15 minutes when run by itself,
2009 Mar 25
2
Listing of LAPACK error codes
Professor Ripley commented on LAPACK error codes:
https://stat.ethz.ch/pipermail/r-help/2007-March/127702.html and says
"Internal LAPACK errors are usually problems with arithmetic accuracy,
and as such are compiler- and CPU-specific."
Is there a listing for the error codes from Lapack routine 'dsyevr'?
Especially I am interested about the meaning and handling of error codes 1
2007 Sep 11
2
building with atlas version of blas and lapack
I'd like to build R using my optimized blas and lapack libraries. It seems
know matter what I do, the configure script uses the blas supplied with the
source. My blas and lapack libraries are in /usr/local/atlas/lib. How can I
get configure to use these?
[[alternative HTML version deleted]]
2020 Oct 06
0
Switching BLAS/LAPACK without leaving your R session
Hi all,
We are excited to announce that this new feature is coming to Fedora
33, which is in beta state. See [1] or [2] for more information on how
to test it.
[1] https://cran.r-project.org/bin/linux/fedora/
[2] https://www.enchufa2.es/archives/switch-blas-lapack-without-leaving-your-r-session.html
Regards,
--
I?aki ?car
2014 Dec 16
0
BLAS/LAPACK routine 'DLASCL' gave error code -4 in liblapack3 Version 3.5.0
Dear Madlene,
while this list serves as a forum for discussions about R backports present on
CRAN, this would be something preferably filed in the Debian bug tracking
system bts.debian.org - could you file a bug there? But please don't ask me on
which package - maybe Dirk has a good answer to that one...
Cheers,
Johannes
P.S.: https://www.debian.org/Bugs/Reporting
Am Dienstag, 16.
2014 Dec 16
1
BLAS/LAPACK routine 'DLASCL' gave error code -4 in liblapack3 Version 3.5.0
On 16 December 2014 at 14:45, Johannes Ranke wrote:
| this list serves as a forum for discussions about R backports present on CRAN,
The mandate, as I recall, is a little broader: "usage of R on Debian-based systems"
As such, I found the post perfectly adequate. We redirect from r-help and
other lists to here because it is the one focus point for all things related
to Debian / Ubuntu
2007 May 29
1
LAPACK and BLAS libraries
Hi,
I don't know if I'm sending this to the right place but I've looked throught
tens and tens of topics on http://tolstoy.newcastle.edu.au/ and finally
found that email address where I can maybe find some help.
Well my main goal is to get to use the lapack library within my R package
(which can be done using calls from C). But in order to do this I have to
create a file src/Makevars
2007 May 29
1
LAPACK and BLAS libraries
Hi,
I don't know if I'm sending this to the right place but I've looked throught
tens and tens of topics on http://tolstoy.newcastle.edu.au/ and finally
found that email address where I can maybe find some help.
Well my main goal is to get to use the lapack library within my R package
(which can be done using calls from C). But in order to do this I have to
create a file src/Makevars
2023 Dec 31
1
custom built R will not change BLAS/LAPACK with update-alternatives
On 30 December 2023 at 23:49, Ramon Diaz-Uriarte wrote:
| All is good. (Just for the sake of curiosity, and if you have the time: why did you find those incantations suspicious?)
Memory is fuzzy and no ECC in my wetware :) but as I seem to recall it had
to do with my fears over filenames not being standardized enough / this
interfering with the update-alternatives mechanism. May well have been
2012 Oct 19
0
--enable-R-shlib and external BLAS/LAPACK libraries
A couple of years ago (in 2008, using R 2.7.x, I believe) I noted that
using the configure switch --enable-R-shlib when buildig R made
configure ignore any specified external LAPACK library and use the
internal one insted. I asked why, and was told it was intentional.
Now, with R 2.15.1, I see that it at least appears that this is no
longer the case. I've run configure like this:
2012 Sep 21
0
--enable-R-shlib and external BLAS/LAPACK libraries
A couple of years ago I noted that using the configure switch
--enable-R-shlib when buildig R made configure ignore any specified
external LAPACK library (I cannot recall if also the BLAS specification
was ignored) and use the internal one insted. I asked why, and was told
it was intentional.
Now, with R 2.15.1, I see that it at least appears that this is no
longer the case. I've run
2002 Dec 26
3
BLAS/Lapack on OS X
R-devel has the --with-lapack flag for configure. If you build R with
--with-blas="-framework vecLib" --with-lapack="--framework vecLib"
then the build goes through, using the native optimized BLAS and
Lapack in /System/Library/Frameworks/vecLib.framework. Also, it
works, in the sense that it does eigenvalue problems correctly.
I don't have any timings yet, because I