similar to: GotoBLAS2 breaks lapack

I've attempted to use the optimized GotoBLAS2 library with a freshly compiled R-2.11.1 patched on 64-bit Ubuntu 10.4. (See details below). When I run this version of R, the timings are not different than the original install, and only one core is used in test computations. Can someone point out my error? Thanks. --Dale Details ... I'm running the 64-bit version of Ubuntu 10.04 on my 2

dear debian-R group: I am using the stock ubuntu binary R 3.0.1 for ubuntu raring but on cinnamon mint olivia 15. I read dirk's gcbd paper from a couple of years ago. it suggests that stock blas is pretty bad compared to the four main alternatives. of course, dirk also maintains the binaries for debian/ubuntu R, so he probably knows the answer off hand. I installed libatlas3-base

Dirk Eddelbuettel <edd <at> debian.org> writes: > One last follow-up. Debian's Atlas maintainer has started to work in the > OpenGoto packaging. There will be proper Goto packages now that the license > is better, but it may take a while. It took years to get Atlas packaged > 'right' so don;t expect anything too soon. The gotoblas2-helper package is >

Hi I just read the thread on gotoBLAS, as well as the excellent vignette of gcbd. I still have some confusion and would like to ask very basic questions, hope I am not taking too much of your time. The point that retained my attention was the question of using implicit (multi-threaded blas) versus explicit (parallel code) optimisation. As I understood, the ideal would be to use a

Dear all, I am estimating a mixed-model in Ubuntu Raring (13.04¸ amd64), with the code: fm0 <- lme(rt ~ run + group * stim * cond, random=list( subj=pdSymm(~ 1 + run), subj=pdSymm(~ 0 + stim)), data=mydat1) When I check the approximate variance-covariance matrix, I get: > fm0$apVar [1] "Non-positive definite

Has anyone succeeded in getting a parallel BLAS, such as Goto's BLAS, installed on a machine running Ubuntu 11.10? I currently have the libatlas3gf-base package installed on a machine with an AMD Athlon X4 processor. I tried to install the libopenblas-base and libopenblas-dev packages but there seemed to be a glich related to having both libopenblas and libatlas3gf installed so that when I

Hi, Since upgrading to version 2.11.0~20100402-1, starting R fails with: /usr/lib64/R/bin/exec/R: error while loading shared libraries: libblas.so.3gf: cannot open shared object file: No such file or directory Is this occurring to others on sid? -- Seb

Hello, After upgrading to 2.7.2 this morning via the cran repository, I get the following error when calling R via the command line: Error in dyn.load(file, DLLpath = DLLpath, ...) : unable to load shared library '/home/jstumpf/R/i486-pc-linux-gnu-library/2.7/kernlab/libs/kernlab.so': libRlapack.so: cannot open shared object file: No such file or directory Fatal error: unable to

Can one of you give me an R program that displays the benefits an accelerated BLAS in R? Here's why I ask, in case you wonder: In a linux cluster, I've hit some bumps in the road. The worst one by far was that I installed R, then GotoBLAS2 with default settings, and after that, jobs using Rmpi were *really* *really* slow. I mean horrible. If a job took 15 minutes when run by itself,

Hi folks, if you want to use MKL (the fast BLAS I have tested on my Thinkpad T410) with the R 2.14.0 built as Debian/Ubuntu packages available on CRAN mirror, the following tricks may works for without some known side-effects (likes openmp breaking issues), you may try to build your own libblas.so.3gf.0 with following command: $ gfortran -L/opt/intel/lib/intel64 -liomp5

today i upgraded from 2.12 to 2.15.2 on ubuntu 12.04 and now i get this message whenever i try to start R. Error in dyn.load(file, DLLpath = DLLpath, ...) : unable to load shared object '/usr/lib/R/library/stats/libs/stats.so': /usr/lib/liblapack.so.3gf: undefined symbol: ATL_chemv any suggestions as to how to fix this? [[alternative HTML version deleted]]

Hi, everybody. I notice debian packages for Ubuntu on CRAN are missing "libRblas.so" and I'm trying to find out why. Why do I care? We are working in an hpc project in a CentOS Linux cluster. That led me to the question of "which BLAS is fastest?" Dirk E referred me this morning to the R admin manual. The standard R compilation creates a shared blas library libRblas.so

Hi, I put below Rblas.dll(GotoBLAS2 for Win64). http://prs.ism.ac.jp/~nakama/SurviveGotoBLAS2/binary/windows/x64/Rblas.dll It's a tryal phase. -- EI-JI Nakama? <nakama (a) ki.rim.or.jp> "\u4e2d\u9593\u6804\u6cbb"? <nakama (a) ki.rim.or.jp>

Hola Tengo el siguiente problema: Estoy trabajando con una serie de tiempo que contiene 48 datos, en el intervalo entre un dato y otro es de 30 minutos. ¿Como puedo hacer para que cada dato de la serie me lo reconozca en hora y minuto?. Saludos El 23 de septiembre de 2012 12:17, <r-help-es-request@r-project.org>escribió: > Envíe los mensajes para la lista R-help-es a >

Hi, I can not install packages from source which links to RcppArmadillo on Ubuntu 20.04 (after upgrading from 18.04). The following problem occurs: ** testing if installed package can be loaded from temporary location Error: package or namespace load failed for 'myPackage' in dyn.load(file, DLLpath = DLLpath, ...): unable to load shared object

Hola. Tengo un problema con la instalación de paquetes en R. Por ejemplo, al intentar instalar el paquete "psych" o "abind" obtengo lo siguiente como resultado (ya sea que lo haga descargado el paquete, o ya solicitando que lo haga desde la red). Utilizo R 2.15.1 en Ubuntu 11.10 y apenas estoy iniciando en R. Necesito ayuda para resover estos problemas, pues necesito sobre todo

Hello!, this is my first post, I am a beginner user of ubuntu linux. I have a problem installing packages from CRAN repositories, I mean using the command install.packages(). I followed the instructions from this site http://cran.r-project.org/index.html. I know that I need the ubuntu package r-base-dev to install packages with that command. I run in a terminal the following commands:

Hello, This simple SVD calculation (commands are copied immediately below) crashes on my Ubuntu machine (R 2.13.0). However it worked fine with R.12 and Ubuntu 10.04, and it also works fine on my Windows 7 machine with R 2.13, so I suspect there's a problem with (my?) Ubuntu and / or R. I'm using the R distribution that is accessible with Ubuntu's repositories manager, I am not

Hello To update from R 2.6 to 2.8 (on Ubuntu 8.04 both) I had to install new tcl and liblapack packages (excuse me it is in french): > sudo apt-get install r-base-dev > Lecture des listes de paquets... Fait > Construction de l'arbre des d?pendances > Lecture des informations d'?tat... Fait > Les paquets suppl?mentaires suivants seront install?s : >

Il 30/04/20 03:39, Dirk Eddelbuettel ha scritto: > > On 30 April 2020 at 03:26, Samuele Carcagno wrote: > | I'm not familiar with the internals of `viridisLite`, so I'm not sure > | I'd be able to help there. I could open a bug report on the > | `viridisLite` repo and see if the author has suggestions on how to > | narrow down the issue. > > It would help if