similar to: Installation of R package gsl and its corresponding GSL library

I am trying to install the gls package (a wrapper for GNU scientific library special functions) package under Ubuntu 5.10. I have gls-bin (the debian GNU Scientific Library binary package). When I try to install the R package, I receive the following. > install.packages("gsl",dependencies=T) Warning in install.packages("gsl", dependencies = T) : argument

Full_Name: Levi Waldron Version: 2.5.1 OS: Ubuntu Gutsy Submission from: (NULL) (206.248.157.88) I installed libgsl0-dev then tried to install the gsl cran package, unsuccessfully (see output below). As a workaround I created a symbolic link to /usr/bin/gcc-4.2, ie: sudo ln -s /usr/bin/gcc-4.1 /usr/bin/gcc-4.2 The correct behavior of the gsl package should be to use the executable

Newbie here (to R) and running Linux... > install.packages("gsl","~/R") ... trying URL 'http://cran.wustl.edu/src/contrib/gsl_1.8-4.tar.gz' Content type 'application/x-tar' length 57051 bytes opened URL ================================================== downloaded 55Kb * Installing *source* package 'gsl' ... checking for gcc... gcc checking for C

On 22 November 2007 at 20:00, leviwaldron at gmail.com wrote: | Full_Name: Levi Waldron | Version: 2.5.1 | OS: Ubuntu Gutsy | Submission from: (NULL) (206.248.157.88) | | | I installed libgsl0-dev then tried to install the gsl cran package, | unsuccessfully (see output below). As a workaround I created a symbolic link to | /usr/bin/gcc-4.2, ie: | | sudo ln -s /usr/bin/gcc-4.1 /usr/bin/gcc-4.2

Following the recommendation of Prof. Ripley, I have created the Makevars file with the line: PKG_LIBS="-L/usr/lib/libm -lm -L/usr/local/lib/libgsl -lgsl -L/usr/local/lib /libgslcblas -lgslcblas" in the working directory. Now I have the code file Example3.c which computes the Bessel function value (the example is taken from the GSL reference book). I am running: R CMD SHLIB Example3.c

Dear R-list, I want to use shared library of gsl in R(2.15.1) on unix .I have a makefile such as CC = gcc CFLAGS = -fPIC -O2 PKG_LIBS -lgsl -lgslcblas -lm -lpthread ? OBJS_SPB = calc_spb.o k.o dk.o ddk.o ? ? calc_spb.so : $(OBJS_SPB) ? ????? $(CC) -shared -o calc_spb.so $(LIBS) $(OBJS_SPB) ? clean : ????? rm -f ../*.o *.o ? clean.so: ????? rm -f *.so ? I use R CMD SHLIB calc_spb.c in terminal

I have an upcoming JASA paper with an iid sampling algorithm for Bayesian Generalized Linear models (e.g., Logit, Poisson Regression, and Conditional Logit models with multivariate normal priors). At this point, I have implemented the algorithms in C and hope to make the functions and corresponding source code available through an R package. I have successfully created the code necessary to

Dear R users: I have a problem when installing the R package *gsl*. The procedure is as follows: (1) Since it needs a GSL vesion >=1.12, and the GSL library on the serve I use is too old, I download GSL 1.15 and install it in my own account, such as $HOME/local/gsl. Because I do not have root access, so it cannot be installed in standard folder. (2) Then I download the source code of R

Hi, I am writing a function in C that is meant to be called by R. In the C function, I used a gsl function gsl_stats_mean. The code is as simple as below void gsl(double *m, int *dim){ int r, c; r = dim[0]; c = dim[1]; double mean = gsl_stats_mean(&m[0], 1, r); Rprintf("mean = %f\n", mean); } The C code is succesfully compiled and the output is as follows. $ R CMD SHLIB

On 13/09/2017 9:10 AM, David Brayford wrote: > Hi Duncan, > > The output of gsl-config --version > 2.3 > > The output of gsl-config --cflags > -I/lrz/sys/libraries/gsl/2.3/include > > The output of gsl-config --libs > -L/lrz/sys/libraries/gsl/2.3/lib -lgsl -lgslcblas -lm > > gsl_version.h cat output > #define GSL_VERSION "2.3" > #define

I tried to dynamically load a c++ function. Everything seems to be OK when dyn.load() is executed but then I get this error Error in .C("integral", sumInMean, sumInVar, boundError, numberSampleClasses, : C/Fortran function name not in load table The code of the function is something like this: #include <cmath> extern "C" { #include

Dear R-list people, I asked a similar question a few hours before. I will try to be more specific. We like to add the GSL library to the file SHLIB in order to make it possible to run the C code using GSL functions from R. We read that the path to the libgsl.a should be added to the line shlib_libadd=' ' in the file SHLIB but it does not work on our system. Dyn.load fails with error

Hello, I tried this posted on the R devel subforum but no help so far. Maybe the wider net will be fruitful. Probably a pretty simple issue. The short story goes, I'm writing C source code and compiling it in as *.dll in the windows terminal by R CMD SHLIB foo.c. It works, I'm on a 64-bit system. I have the lastest R 2.15.0 and Rtools, and I am using the gcc 4.6.3 compiler. However,

On 13/09/2017 5:23 AM, Brayford, David wrote: > When I try to install gsl in R I get the error Need GSL version >= 1.12 . However, I have version 2.3 of gsl installed on the system, which is picked up earlier in the configure process (see below). Is it possible for someone to fix this error in the configure script? > > checking for gsl-config...

Thank you to everyone who responded to my previous post regarding the integration into R of C programs that use external libraries. I have another issue that I simply have not been able to figure out using documentation, list archives, and so forth. I have data that is stored in R lists. I would like to pass the list to C code using the .Call function, perform mathematical operations on the

Hi, I'm trying to install the gsl wrapper source code (http://cran.r-project.org/src/contrib/gsl_1.9-8.tar.gz) on a Linux system (OpenSuse 11.1), but encountering the following problem. I've already installed 'gsl' version 1.14 (ftp://ftp.gnu.org/gnu/gsl/gsl-1.14.tar.gz) on the system. What's missing? Thanks a lot... > R CMD INSTALL gsl * installing to library

hello I maintain the gsl R package, and many users have recently reported that the package does not install from source under macosx 10.9 ("mavericks"). Users typically install the gnu GSL library and are able to compile and run a small "hello world" program which executes some of the Bessel functionality of the library; but under mavericks the configure script (which uses

Hi all, I am new to R and am writing after having contacted Robin Hankin, who maintains the R gsl wrapper. I am trying to use an AFNI (neuroimaging analysis) program that depends on the R gsl package. When I try to use the script I wrote, I get an error that led me to suspect the gsl package was a culprit. When I do library("gsl") within R, I get: Error in dyn.load(file, DLLpath

I have been working on an R package that calls C code using .C(). I recently started including some functions from the GNU Scientific Library in my code. The code runs fine on my machine when not wrapped in the package. But I get the following error from "R CMD check" * checking whether the package can be loaded ... ERROR Loading required package: splancs Loading required package: sp

Hello, Novice programmer. I'm writing C source code and compiling it in as *.dll in the terminal by R CMD SHLIB foo.c. It works, I'm on a 64 bits windows system. I have the lastest R 2.15.0 and Rtools using the gcc 4.6.3 compiler. However, that was a hello world run, and I installed GSL for the 64 bit system for fast MCMC. The Rcpp package was easy to use, but I opted for a C with GSL