similar to: Linking Fortran code to BLAS in Ubuntu

Dear R-devel, I've written a numerical solver for SOCPs (second order cone programs) in R, and now I want to move most of the solver code into C for speed. I've written combined R/C packages before, but in this case I need to do matrix operations in my C code. As I have never done that before, I'm trying to write some simple examples to make sure I understand the basics. I am stuck

Hello I'm trying to run a fortran code which use LAPACK subroutines. I think I should use some points shown in the manual 5.5 Creating shared objects but it is too technical for me :-(... Could anyone help me for the procedure to do: -which part of the manual is relevant for this type of question? actually I'm speaking from writing R extensions, should I read R admin? -point 1.2

Dear helpers, I am trying to create a library which uses some Fortran source files and Lapack and Blas subroutines. The Fortran source files from the original author contain subroutines isamax.f, sgefa.f and sgesl.f, which are part of BLAS subroutines on my Linux computer, but maybe different (old) versions. So in addition to these subroutines, there are other Lapack and Blas subroutines

Hi, what is the correct way to specify a C standard in a package's Makevars file? Building a package with e.g. PKG_CFLAGS = -std=gnu11 does work but R CMD check issues a warning: * checking compilation flags in Makevars ... WARNING Non-portable flags in variable 'PKG_CFLAGS': -std=gnu11 (Same for -std=c11.) Thanks! Regards, Andreas Kersting

Hi, I don't know if I'm sending this to the right place but I've looked throught tens and tens of topics on http://tolstoy.newcastle.edu.au/ and finally found that email address where I can maybe find some help. Well my main goal is to get to use the lapack library within my R package (which can be done using calls from C). But in order to do this I have to create a file src/Makevars

Hi, I don't know if I'm sending this to the right place but I've looked throught tens and tens of topics on http://tolstoy.newcastle.edu.au/ and finally found that email address where I can maybe find some help. Well my main goal is to get to use the lapack library within my R package (which can be done using calls from C). But in order to do this I have to create a file src/Makevars

Why is it that R places CFLAGS after PKG_CFLAGS and not before when compiling a package (e.g. through R CMD build pkg)? This can be problematic if, for instance, you want to use -O3, but -O2 is in R_HOME/etc/Makeconf. If -O2 (in CFLAGS) appears after -O3 (in PKG_CFLAGS), you are left with what you didn't want: -O2. In R-exts, it says that "Flags which are set in file etc/Makeconf

Hi. I am writing some code in C that I would like to link into R. My Makevars file is: PKG_CPPFLAGS=-I/usr/local/include PKG_LIBS=-L/usr/local/lib -lgsl PKG_CFLAGS = -Wall -O0 -g -p -pg The source file is core.c,. and I am compiling using R CMD SHLIB core.c The output is gcc -arch x86_64 -O3 -g -p -std=gnu99 -I/Library/Frameworks/ R.framework/Resources/include

Hi, I am working on a UNIX machine and I am interfacing R and C with the .C function. I am trying to call LAPACK and BLAS routines, but am running into a problem where, while I am able to run the BLAS routines, I cannot run the LAPACK routines. I compile my .c file (at end of email) in the following way: [mhitczen at jlogin2 ~/Cstuff]$ R CMD SHLIB testmore.c gcc -std=gnu99

Dear R-developers, I am trying to reproduce the autoconf.ac example from R-ext and fail. My autoconf file looks like this [autoconf.ac] # original by Friedrich Leisch, much changed by BDR AC_INIT([SBMLodeSolveR]) dnl Select an optional include path, from a configure option dnl or from an environment variable. AC_ARG_WITH([sbmlode-include],

Dear all, I am running R : Copyright 2005, Version 2.2.1 (2005-12-20 r36812) ISBN 3-900051-07-0 On a mac 10.4.5 I am having trouble with my package. The trouble is the following: In my package I have integrated three files in my src folder. 1- simplematch.C a .C file 2- ordering.f a fortran file 3- Makevars : PKG_LIBS = $(LAPACK_LIBS) $(BLAS_LIBS) $(FLIBS) I am not sure if that last file is

On Tue, 8 Feb 2005, Kurt Hornik wrote: > This concerns the packages... > for which current versions of r-devel now report problems with > non-portable compilation flags in Makevars[.in] files: > > Problems in package 'rwt': > Non-portable flags in variable 'PKG_CFLAGS': > -Wall -ansi -pedantic > > These flags are mostly GCC specific and not

Dirk, thank you a thousand times. Indeed, src/Makevars was wrong. I modified Makevars so that now looks like the below and the package now compiled and linked properly. CXX_STD = CXX11 PKG_LIBS += $(SHLIB_OPENMP_CXXFLAGS) $(LAPACK_LIBS) $(BLAS_LIBS) $(FLIBS) $(shell ${R_HOME}/bin/Rscript -e "RcppParallel::RcppParallelLibs()") PKG_CXXFLAGS = $(SHLIB_OPENMP_CXXFLAGS) -I../inst/include

Dear all, As previously submitted, I wrote an extending pdf device to embed pop up text and web links. (Patches are available at http://pdf2.r-forge.r-project.org/patches) Now, I'm making a library version of the pdf device. However, with my skill, I'm not sure about writing Makevars or configure file for multi platforms. A following line in Makevars works on my mac, -----

Hi, I'm searching for a way to override the default CFLAGS/FFLAGS (-g -02 in my case) per package (e.g with "-g" for packages under development). PKG_CFLAGS/PKG_FFLAGS is prepended to the remaining flags, so it can't delete a globally set "-O2" flag. Of course I can edit the global Makeconf file, but I was wondering if there is a possibility to override variables from

Hello, In the src folder of my R package I have a.cc b.cc f/g/x.cc my Makevars.in has all: $(SHLIB) upon installing only, a.o and b.o is build and the final dll is comprised of a.o and b.o How can I instruct $(SHLIB) to pick up its source files from all subdirectories (or maybe a subset, though here it will be all) in src ? Much thanks Saptarshi

Hello, I thought that I should try openblas when building a CRAN package containing lots of old (twentieth century) C-code with frequent calls to blas and lapack routines. I have the following options on my Ubuntu 20.04 machine: Selection Path Priority Status ------------------------------------------------------------ * 0

Hi, I can not install packages from source which links to RcppArmadillo on Ubuntu 20.04 (after upgrading from 18.04). The following problem occurs: ** testing if installed package can be loaded from temporary location Error: package or namespace load failed for 'myPackage' in dyn.load(file, DLLpath = DLLpath, ...): unable to load shared object

I have been working on an R package that calls C code using .C(). I recently started including some functions from the GNU Scientific Library in my code. The code runs fine on my machine when not wrapped in the package. But I get the following error from "R CMD check" * checking whether the package can be loaded ... ERROR Loading required package: splancs Loading required package: sp

Le 27/09/16 ? 16:17, Kasper Daniel Hansen a ?crit : > As a package author, it is in my opinion irresponsible to override these > system settings (which is why it is also impossible). You have no idea > what system it is being deployed on, as the it guy dedicated to install and maintain softs on our cluster I have a reasonable knowledge of the systems I work on. I don't want to