similar to: [PATCH] permute with 2MB chunk

Hi there, I would like to find a more efficient way of permuting the rows and columns of a symmetrical matrix that represents ecological or actual distances between objects in space. The permutation is of the type used in a Mantel test. Specifically, the permutation has to accomplish something like this: Original matrix addresses: a11 a12 a13 a21 a22 a23 a31 a32 a33 Example

Hi all, I am new to R. Can someone please give me some hints in how to do the following things: 1- Get ONE permutation of a set. I have looked at the gregmisc package's permutations() method, but I just want to get one permutation at a time. 2- Simulate a Markov chain in R. For instance, I want to simulate the simple random walk problem, in which a person can walk randomly around 4 places.

Hi, I am trying to make the vt-d and pci pass-through work and I have some problems. I just try to give a NIC to an HVM guest. When I create the vm the hypervisor goes to an infinite loop, it displays in loop the message enclosed (console_on_xm_create). I use xen x86_64, debian etch dom0 with linux-2.6.18.8-xen 32. The hvm guest is a debian etch 64. Cheers, -- Jean Guyader

Hi all, I try to generate sets of strategies that contain probability distributions for a defined number of elements, e.g. imagine an animal that can produce 5 different types of offspring and I want to figure out which percentage of each type it should produce in order to maximize its fitness. In order to do so, I need to calculate the fitness for all potential strategies. As an example, if I

I am trying to apply this technique (M.J Anderson 2001) to a dataset of aquatic insect abundances. There is a sample in the unrestored and restored segement of a stream for every time period. I would like to compare the centroids of the distance matrices for the treatments up (unrestored) and dn (restored) to see if there is a difference in insect communities between the treatments. I will not

The GGC field have moved from 0x52 to 0x50 on Sandy Bridge. Signed-off-by: Jean Guyader <jean.guyader@eu.citrix.com> _______________________________________________ Xen-devel mailing list Xen-devel@lists.xensource.com http://lists.xensource.com/xen-devel

Dear R users, I am trying to perform a hypothesis test on a marked point pattern. I would like to calculate the mean of the absolute value of the difference of marks between nearest neigbours, randomize the marks among points, then calculate this mean again. Ideally, I would test whether random mean values smaller than the observed mean value occur less than 5% of the time. I suppose 1000

Expose more host bridge config space value to make the driver happy for all the different revisions of the device. Signed-off-by: Jean Guyader <jean.guyader@eu.citrix.com> --- hw/pt-graphics.c | 3 +++ 1 files changed, 3 insertions(+), 0 deletions(-) _______________________________________________ Xen-devel mailing list Xen-devel@lists.xensource.com

Dear all, How can I run a constrained correspondence analysis with the following data: 15 animals were measured repeatedly month-wise (over to 2 years) according to ther diet composition (8 food categories). our data.frame looks like this: food 1 2 ... 8 sex season year animal freq 12 8 ... 1 0 summer 2011 1 freq 0 7 ... 0 1 winter 2011 1 ... freq 0 7 ... 0 1 spring 2011 15 We

J?r?me, As a first attempt, how about the function below. It works (or not) by randomly sorting the rows and columns, then searching the table for "squares" with the corners = matrix(c(1,0,0,1),ncol=2) and subtracting them from 1 to give matrix(c(0,1,1,0),ncol=2) (and vice versa). Randomized matrices can be produced as a chain where each permutation is seeded with the previous one.

The OpRegion shouldn''t be mapped 1:1 because the address in the host can''t be used in the guest directly. This patch traps read and write access to the opregion of the Intel GPU config space (offset 0xfc). To work correctly this patch needs a change in hvmloader. HVMloader will allocate 2 pages for the OpRegion and write this address on the config space of the Intel GPU. Qemu

Hi, I'm very new to working with sparse matrices and would like to know how I can column permute a sparse matrix. Here is a small example: > M1 <- > spMatrix(nrow=5,ncol=6,i=sample(5,15,replace=TRUE),j=sample(6,15,replace=TRUE),x=round_any(rnorm(15,2),0.001)) > M1 5 x 6 sparse Matrix of class "dgTMatrix" [1,] 2.983 . 1.656 5.003 . . [2,] .

Hi there, We are using latest version of XCP on 6 hosts. While issuing VM.start or VM.start_on xmlrpc functional call , it says : {''Status'': ''Failure'', ''ErrorDescription'': [''SESSION_INVALID'', ''OpaqueRef:cfb6df14-387d-40a1-cc27-d5962cba7712'']} However if I put VM.start in a loop maybe after

Hi, I have optimized the shrinkage parameter (GCV)for ridge and got my r2 value is 70% . to check the sensitivity of the result, I did permutation test. I permuted the response vector and run for 1000 times and draw a distribution. But now, I get r2 values highest 98% and some of them more than 70 %. Is it expected from such type of test? *I was under impression that, r2 with real data set

Thanks, David. I got the answer from the web. Is there any easy way to permute a set (e.g., a set of characters) by the permutation it returns? Thanks, > x <- c(10,7,4,3,8,2) > sort(x, index.return=TRUE) $x [1] 2 3 4 7 8 10 $ix [1] 6 4 3 2 5 1 2018-05-23 10:49 GMT+08:00 David Winsemius <dwinsemius at comcast.net>: > > > > On May 22, 2018, at 10:06 PM, John

flight 10458 xen-4.1-testing real [real] http://www.chiark.greenend.org.uk/~xensrcts/logs/10458/ Failures and problems with tests :-( Tests which did not succeed and are blocking: test-amd64-i386-xl-credit2 3 host-install(3) broken test-amd64-amd64-xl-sedf 3 host-install(3) broken test-amd64-amd64-xl-winxpsp3 3 host-install(3) broken

These values are already defined by the libpci heders in the version 3.1.7. PCI_STATUS_66MHZ PCI_STATUS_RESERVED2 PCI_STATUS_FAST_BACK PCI_MSIX_TABSIZE Signed-off-by: Jean Guyader <jean.guyader@eu.citrix.com> --- hw/pci.h | 6 ++++++ hw/pt-msi.h | 2 ++ 2 files changed, 8 insertions(+), 0 deletions(-) _______________________________________________ Xen-devel mailing list

> On May 22, 2018, at 10:57 PM, John <miaojpm at gmail.com> wrote: > > Thanks, David. > I got the answer from the web. > Is there any easy way to permute a set (e.g., a set of characters) by the permutation it returns? Thanks, > > > > x <- c(10,7,4,3,8,2) > > sort(x, index.return=TRUE) > $x > [1] 2 3 4 7 8 10 > > $ix > [1] 6 4 3 2

> sort(c("bc","ac","dd"), index.return=TRUE) $x [1] "ac" "bc" "dd" $ix [1] 2 1 3 We have the permutation, namely 1-->2, 2-->1, 3-->3. How can I apply the permutation function to a new set c("D","E", "F")? so that the result is c("E","D", "F"). 2018-05-23 11:06

ioemu-remote: The device model needs to write in the ACPI tables when it wakes up from S3 state. Signed-off-by: Jean Guyader <jean.guyader@eu.citrix.com> -- Jean Guyader _______________________________________________ Xen-devel mailing list Xen-devel@lists.xensource.com http://lists.xensource.com/xen-devel