similar to: Introducing Red-R: visual programming for R

> On Jul 20, 2017, at 7:53 AM, Larry Martell <larry.martell at gmail.com> wrote: > > I need to install rpy2 on RHEL6. The version of R in the 6 repos is > 3.0, and rpy2 does not work with that version. I installed R 3.3.3 > following the directions here: > https://oguya.ch/posts/2017-03-18-building-R-on-rhel-6/. But even with > 3.3.3 it's still failing. Using pip it

I need to install rpy2 on RHEL6. The version of R in the 6 repos is 3.0, and rpy2 does not work with that version. I installed R 3.3.3 following the directions here: https://oguya.ch/posts/2017-03-18-building-R-on-rhel-6/. But even with 3.3.3 it's still failing. Using pip it fails with: /usr/local/lib64/R/lib/libR.a(CommandLineArgs.o): could not read symbols: Bad value and installing from

On 20 October 2010 at 09:57, Aman Thakral wrote: | Thanks for your reply. I just created a link to | /usr/local/lib/R/lib/libRlapack.so in /usr/local/lib. It works now. | I'm just curious, is this the "right" way to do it? Is there a better way? I am coming to this a little late but ... it is a band aid to a self-inflicted wound. You only have libRlapack because you built R

Hi - I am having trouble installing rpy2. I have already compiled R as a shared library, but I do not have admin privileges on so I am trying to install rpy2 with: pip install -user rpy2 but I am getting the following error: ======================================== ./rpy/rinterface/_rinterface.c:86:31: fatal error: readline/readline.h: No such file or directory compilation terminated. error:

In Python, it is literally this easy: import rpy2.robjects as robjects robjects.r(""" source("C:/ YOUR R FILE GOES HERE ") """) Type the name of your R source code into this script and save it as a Python script (add the suffix .py), and then you can run by double-clicking. If you want to see the results of your program, you'll have

Hi While installing RPy2, I had curious problems which, if I traced them back correctly, have their root in the way that libR.so find the R installation directory. I wonder if this might be a subtle bug that only causes problems when one has several versions of R on one system but then can be very annoying and cause very strange behaviour. It seems to me that libR.so asks the Unix shell to

Dear list, When calling R from C, what appears like a spurious error can be triggered during the execution of chisq.test(x, y). This is happening when the following conditions are met: - x and y are "anonymous" C-level R vectors (they do not have a symbol), but they are protected from garbage collection - x and y are "not too small" (it was experienced as soon as they are

Dear list, there seems to be a problem with the standard location of R?s 64-bit libs at least under openSUSE. I had two user questions regarding the compilation of rpy2 for 64-bit systems. Personally I don`t know rpy2 but maybe someone on this list can decide if the mistake lies on R`s side or on rpy2?s side or in between. R-devel is installed in these cases, I asked. Latest R-base or

Hi all, I am new to python, R and rpy2. I having few errors when I am using 'fisher.test' function where I am struck now. Please help to fix these bugs. My code for fisher.test goes this way *from rpy2 import * import rpy2.robjects as robjects def fisherExact(a,b,c,d): v = [a,b,c,d] m = robjects.r['matrix'](v,2,2) s = robjects.r['fisher.test'](m) return s *

Hi, I have some trouble to get the Python bindings RPy2 running with the latest release of R. I'm using Windows. The reason is, that RPy2 looks at certain places for R.dll, as $R_HOME/bin and $R_HOME/lib, but not at $R_HOME/bin/i386 where the dll is located on my machine. So I suspect that the directory structure has changed and the RPy2 team did not notice it. I would like to discuss a

Hello! I activated quota plugin { quota = maildir:User quota quota_rule = *:storage=1GB # 10% of 1GB = 100MB quota_rule2 = Trash:storage=+10%% } But when I want to do per user quota in the passwd-file ...vhosts/anup.de/anmeyer::userdb_mail=maildir:~/userdb_quota_rule=*:bytes=10G I get this in the logfile and can't login: Jun 08 22:25:52 imap(anmeyer at anup.de): Error:

Dear Friends, My problem is related to how to measure probabilities from a probit model by changing one independent variable keeping the others constant. A simple toy example is like this Range for my variables is defined as follows y=0 or 1, x1 = -10 to 10, x2=-40 to 100, x3 = -5 to 5 Model output <- glim(y ~ x1+x2+x3 -1, family=binomial(link="probit")) outcoef <-

Hello! I tried to setup dovecot to work with IMAP and POP3 but when I connect with Squirrelmail, I get an error saying CREATE "INBOX.Sent" reason: Mailbox doesn't allow inferior mailboxes # dovecot --version 1.0.5 # dovecot -n # 1.0.5: /etc/dovecot/dovecot.conf log_path: /var/log/dovecot protocols: imap imaps pop3 ssl_disable: yes login_dir: /var/run/dovecot/login

Hello! A Server running openSUSE 12.3 and dovecot version 2.1.13. In the log I find Oct 19 00:23:23 managesieve(anmeyer at anup.de): Warning: sieve-storage: Active sieve script symlink /var/spool/vhosts/anup.de/anmeyer/.dovecot.sieve is broken: invalid/unknown path to storage (points to /var/spool/vhosts/anup.de/anmeyer/.sieve/managesieve.sieve). But the link is ok and when I login to roundcube

Beside the possible argumentation that with an API elegance and convenience might sometimes be superior to necessity, the suggested pattern ("every program, including R itself, keeping its own flag") does no work too well when the nested embedding of R is involved. A concrete example is: ``` $ R -q > library('rPython'); python.exec('import rpy2.robjects') R is already

Hallo Waffenmeister! Ralf Hildebrandt <Ralf.Hildebrandt at charite.de> wrote: > > Apr 7 14:07:52 delta postfix/qmgr[19078]: 1D8921B31260: from=<anmeyer at anup.de>, size=1492149, nrcpt=1 (queue active) > > Apr 7 14:07:53 delta postfix/pipe[19091]: 1D8921B31260: to=<miles at anup.de>, relay=dovecot, delay=2542, delays=2542/0.01/0/0.29, dsn=4.3.0, status=deferred

Just installed a 1st time use of R on a win vista 64 box (4gigram) but asked for the 32 bit version.. I plan to use via Rpy and or Rpy2 installation is via "R-2.12.0-win.exe" got the following when trying to test... raise RuntimeError("Unable to locate R.dll within %s" % R_HOME) RuntimeError: Unable to locate R.dll within C:\PROGRA~1\R\R-212~1.0 Sure 'nuff when I go

Laurent, On May 3, 2015, at 8:07 PM, Laurent Gautier <lgautier at gmail.com> wrote: > rPython appears to provide an interface from R to Python by embedding > Python and I'd think that it can safely assume that R has been initialized, > but might not be the point here. > > The issue is that a Python package embedding itself R (here rpy2) appears > to have no way to

Dear all, I was trying to normalize a subset of affy data those transcribe are either P or M (called pm_filter). I am able to normalize pm_filter subset by using RMA method, however MAS5 is not working. For RMA method, I used the following commend: est<-rma(affydata, subset=pm_filter). Could any help me; how do I do this by using MAS5 method? Regards, Anup Som -- Dr. Anup Som,

Hi CRAN people, There is an issue with python-rpy on Ubuntu, when installed from the CRAN repository. (I read the info on http://cran.r-project.org/bin/linux/ubuntu/ and saw the note that this package is experimental but you are happy to receive feedback on it.) After adding the appropriate CRAN repo: % sudo apt-get install python-rpy [ ... installs various dependencies ... ] % echo import rpy |